Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2028 224 1e-53 seq1411 91.5 2e-13 >seq2028 Length=154558 Score = 224 bits (248), Expect = 1e-53 Identities = 567/859 (66%), Gaps = 13/859 (2%) Strand=Plus/Plus Query 17862 CTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTA 17921 |||| || ||||| || ||||| || || || || ||||| || ||||| || || | Sbjct 59774 CTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGA 59833 Query 17922 AATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCGTA 17979 ||||||| ||||| ||||| || | ||| |||||||| | |||||| Sbjct 59834 TCGTCATAAAGTCAAACGGATTCGTTGCACCATAGA--TTTTCTTGCAGCCTAATTCACT 59891 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 ||| || | ||| ||||||||||| | ||| || ||||||| | ||||||||| || | Sbjct 59892 TAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAAT 59951 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || |||| || | ||| ||| | || |||| ||||| ||| | ||| || Sbjct 59952 CAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAAT 60011 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159 || | |||| || || || ||| | | | || | | |||| ||| || Sbjct 60012 AATACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATG-TGAGAATAG--TAAGCA 60068 Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 ||||||||| |||| |||||||||||||||||| ||||| || ||| ||||| || Sbjct 60069 TGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACC 60128 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 |||||| | ||| | ||| |||| ||| || |||| ||| || |||| | || || || Sbjct 60129 GGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAAT 60188 Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT---GCTCAG 18336 || |||||| || || || | |||||||| | || | || | || ||| Sbjct 60189 GCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCT--- 60245 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 ||||| ||| | ||||| || ||| | |||||| || | || ||||| || Sbjct 60246 AATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTT 60305 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 |||||| |||||||| |||| ||| | ||||| || || || | ||||| Sbjct 60306 AAACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACAT 60365 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 ||||||||| || |||| || || ||||| || | |||||| | | ||| || | Sbjct 60366 TTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCAC 60425 Query 18517 TTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGC 18576 ||||| || | || | ||| || | ||||||||| || ||||| || | | || Sbjct 60426 TTGAACTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGC 60485 Query 18577 GAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTC 18636 ||||| || || || | |||||||||| ||| | | || || || | ||| | Sbjct 60486 AAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTG 60545 Query 18637 ATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTT 18696 || ||| | | || || ||||| || | |||||||| || | ||| || | || Sbjct 60546 TCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTT 60605 Query 18697 GTACATTTTATAAATATCT 18715 ||| | | |||||||| Sbjct 60606 GTATTTCTGCCAAATATCT 60624 >seq1411 Length=135556 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 ||||| | ||||| || || ||||| ||||||| ||| ||| || | |||| ||| Sbjct 106345 AAAACCCTAACTGGCAAGACCATTACTCTAGAAGTGGAACCTTCCGACACTATTGAAAAT 106404 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 || ||| || || || ||||| ||||| || |||||||| || ||||||||||||| | Sbjct 106405 GTAAAAGCCAAGATTCAGGATAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTT 106464 Query 155958 GCCGGTAA 155965 ||||| || Sbjct 106465 GCCGGAAA 106472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731726577033600