Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 224 1e-53
seq1411 91.5 2e-13
>seq2028
Length=154558
Score = 224 bits (248), Expect = 1e-53
Identities = 567/859 (66%), Gaps = 13/859 (2%)
Strand=Plus/Plus
Query 17862 CTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTA 17921
|||| || ||||| || ||||| || || || || ||||| || ||||| || || |
Sbjct 59774 CTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGA 59833
Query 17922 AATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCGTA 17979
||||||| ||||| ||||| || | ||| |||||||| | ||||||
Sbjct 59834 TCGTCATAAAGTCAAACGGATTCGTTGCACCATAGA--TTTTCTTGCAGCCTAATTCACT 59891
Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039
||| || | ||| ||||||||||| | ||| || ||||||| | ||||||||| || |
Sbjct 59892 TAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAAT 59951
Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099
|| |||| || | ||| ||| | || |||| ||||| ||| | ||| ||
Sbjct 59952 CAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAAT 60011
Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159
|| | |||| || || || ||| | | | || | | |||| ||| ||
Sbjct 60012 AATACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATG-TGAGAATAG--TAAGCA 60068
Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219
||||||||| |||| |||||||||||||||||| ||||| || ||| ||||| ||
Sbjct 60069 TGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACC 60128
Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279
|||||| | ||| | ||| |||| ||| || |||| ||| || |||| | || || ||
Sbjct 60129 GGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAAT 60188
Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT---GCTCAG 18336
|| |||||| || || || | |||||||| | || | || | || |||
Sbjct 60189 GCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCT--- 60245
Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396
||||| ||| | ||||| || ||| | |||||| || | || ||||| ||
Sbjct 60246 AATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTT 60305
Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456
|||||| |||||||| |||| ||| | ||||| || || || | |||||
Sbjct 60306 AAACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACAT 60365
Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516
||||||||| || |||| || || ||||| || | |||||| | | ||| || |
Sbjct 60366 TTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCAC 60425
Query 18517 TTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGC 18576
||||| || | || | ||| || | ||||||||| || ||||| || | | ||
Sbjct 60426 TTGAACTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGC 60485
Query 18577 GAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTC 18636
||||| || || || | |||||||||| ||| | | || || || | ||| |
Sbjct 60486 AAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTG 60545
Query 18637 ATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTT 18696
|| ||| | | || || ||||| || | |||||||| || | ||| || | ||
Sbjct 60546 TCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTT 60605
Query 18697 GTACATTTTATAAATATCT 18715
||| | | ||||||||
Sbjct 60606 GTATTTCTGCCAAATATCT 60624
>seq1411
Length=135556
Score = 91.5 bits (100), Expect = 2e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897
||||| | ||||| || || ||||| ||||||| ||| ||| || | |||| |||
Sbjct 106345 AAAACCCTAACTGGCAAGACCATTACTCTAGAAGTGGAACCTTCCGACACTATTGAAAAT 106404
Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957
|| ||| || || || ||||| ||||| || |||||||| || ||||||||||||| |
Sbjct 106405 GTAAAAGCCAAGATTCAGGATAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTT 106464
Query 155958 GCCGGTAA 155965
||||| ||
Sbjct 106465 GCCGGAAA 106472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731726577033600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |