Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 147 4e-30
seq4409 145 2e-29
seq2259 118 2e-21
seq1411 113 9e-20
>seq2028
Length=154558
Score = 147 bits (162), Expect = 4e-30
Identities = 542/850 (64%), Gaps = 9/850 (1%)
Strand=Plus/Plus
Query 49591 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAAT 49649
||||||| ||||| ||||| | | | ||| ||||| | | | ||| || |||
Sbjct 59837 TCATAAAGTCAAACGGATTCGTTGCACCATAG-ATTTTCTTGCAGCCTAATTCACTTAAC 59895
Query 49650 AATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT 49709
|| | ||| ||||||||||| | ||| || |||| |||| |||||||| || | |
Sbjct 59896 AAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAGA 59955
Query 49710 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 49769
| | ||| || || ||| | || |||| ||||||| || || | | ||| ||
Sbjct 59956 CTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATA 60015
Query 49770 ataattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCA 49829
| ||| | | || |||| ||| | | | ||| | ||| ||| ||||||
Sbjct 60016 CTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGT---GAGAATAGTAAGCATGCA 60072
Query 49830 AAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 49889
|||||| ||||| ||| || || || ||||| |||||||| ||| ||||| || |||
Sbjct 60073 AAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGC 60132
Query 49890 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 49949
|| | || | || || | ||| || || | |||||| |||| | || || || ||
Sbjct 60133 ATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCT 60192
Query 49950 TCGACACACGCAAATGCTATTATTCTTGCTCCAAAC-ATTAATTTATC-ATCTAATATCC 50007
|| || ||||| || | | |||| | || ||| | | || || | ||| ||||
Sbjct 60193 TCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTA--ATCC 60250
Query 50008 AATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA 50067
| |||| |||||||| ||||| || || | | | || || |||| ||||| ||||| |
Sbjct 60251 ACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACA 60310
Query 50068 ATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAG 50127
| | |||||||| || | | ||||||||||
Sbjct 60311 AGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAG 60370
Query 50128 AATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAA 50187
|||| | | ||| || || || || ||| |||||| | ||||| | ||||
Sbjct 60371 AATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAA 60430
Query 50188 CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGA 50247
|||| | ||| ||||| || | ||||||| |||||||||||| || || || || |
Sbjct 60431 CTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAA 60490
Query 50248 ATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAA 50307
| ||||| |||| ||| |||||| ||| | | ||| | || ||||| | |
Sbjct 60491 AAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTA 60550
Query 50308 GATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATACA 50367
|||| | | | || ||||| || | |||||||| || ||| | | || || ||
Sbjct 60551 GATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATT 60610
Query 50368 TTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGTAtttttttCTA 50427
| || | ||||| |||||| || |||| ||| ||| | || |||| || |
Sbjct 60611 TCTGCCAAATATCTGGGAATTCAATTGGGAATAAAACAAATCTTCGAGGGTTTTCTTTCA 60670
Query 50428 ATATCGGTTC 50437
|| |||||
Sbjct 60671 GTAAAGGTTC 60680
>seq4409
Length=33873
Score = 145 bits (160), Expect = 2e-29
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368
|||||||| || || | || |||||||| |||| || ||| || ||||||||||| ||
Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGA-ATATTATAATCGGA 17925
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || ||| | || |||| |||||| || || ||||| |||||||| || || || ||
Sbjct 17924 CAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGG 17865
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| || || || ||||| |||||||| |||| || |||| ||| ||
Sbjct 17864 AATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGAC 17805
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| ||||| ||||| || || ||||| || || | || |||||||||
Sbjct 17804 CTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATT 17756
>seq2259
Length=79244
Score = 118 bits (130), Expect = 2e-21
Identities = 166/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363
|||||||||||||| | | | ||| || || | || | ||| || |||||||||
Sbjct 78056 ATAATACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAG 78115
Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423
|| || | || || |||| |||| |||||||||||||||||| || | ||||| ||
Sbjct 78116 TCGGAGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCT 78175
Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483
|| || || |||||||| || || ||||| |||||||| || | || || | |
Sbjct 78176 GGGGGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGT 78235
Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || ||||| |||||||| | ||||| | || || |||||
Sbjct 78236 TCGACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
>seq1411
Length=135556
Score = 113 bits (124), Expect = 9e-20
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| | |||||| | || |||||||| || | ||| || ||| || || |||||
Sbjct 108814 CCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 108755
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| || ||| |||| || | |||||| ||||| ||||| || ||||| ||||| || ||
Sbjct 108754 AGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 108695
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464
||||||||||| ||||| ||||| |||||||||
Sbjct 108694 ATTCCTTCTTTGTCTTGAATTTTGGCTTTTACATT 108660
Score = 87.8 bits (96), Expect = 4e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
|| || ||||| || ||||| || || || || || || ||||| ||||| || || ||
Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||||||||| |||| || || | ||| ||||||||||||||||| || ||||||
Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353
Query 192514 AATGTTTT 192521
| |||||
Sbjct 106352 AGGGTTTT 106345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984279493419600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |