Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2028 147 4e-30 seq4409 145 2e-29 seq2259 118 2e-21 seq1411 113 9e-20 >seq2028 Length=154558 Score = 147 bits (162), Expect = 4e-30 Identities = 542/850 (64%), Gaps = 9/850 (1%) Strand=Plus/Plus Query 49591 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAAT 49649 ||||||| ||||| ||||| | | | ||| ||||| | | | ||| || ||| Sbjct 59837 TCATAAAGTCAAACGGATTCGTTGCACCATAG-ATTTTCTTGCAGCCTAATTCACTTAAC 59895 Query 49650 AATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT 49709 || | ||| ||||||||||| | ||| || |||| |||| |||||||| || | | Sbjct 59896 AAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAGA 59955 Query 49710 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 49769 | | ||| || || ||| | || |||| ||||||| || || | | ||| || Sbjct 59956 CTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATA 60015 Query 49770 ataattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCA 49829 | ||| | | || |||| ||| | | | ||| | ||| ||| |||||| Sbjct 60016 CTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGT---GAGAATAGTAAGCATGCA 60072 Query 49830 AAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 49889 |||||| ||||| ||| || || || ||||| |||||||| ||| ||||| || ||| Sbjct 60073 AAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGC 60132 Query 49890 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 49949 || | || | || || | ||| || || | |||||| |||| | || || || || Sbjct 60133 ATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCT 60192 Query 49950 TCGACACACGCAAATGCTATTATTCTTGCTCCAAAC-ATTAATTTATC-ATCTAATATCC 50007 || || ||||| || | | |||| | || ||| | | || || | ||| |||| Sbjct 60193 TCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTA--ATCC 60250 Query 50008 AATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA 50067 | |||| |||||||| ||||| || || | | | || || |||| ||||| ||||| | Sbjct 60251 ACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACA 60310 Query 50068 ATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAG 50127 | | |||||||| || | | |||||||||| Sbjct 60311 AGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAG 60370 Query 50128 AATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAA 50187 |||| | | ||| || || || || ||| |||||| | ||||| | |||| Sbjct 60371 AATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAA 60430 Query 50188 CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGA 50247 |||| | ||| ||||| || | ||||||| |||||||||||| || || || || | Sbjct 60431 CTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAA 60490 Query 50248 ATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAA 50307 | ||||| |||| ||| |||||| ||| | | ||| | || ||||| | | Sbjct 60491 AAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTA 60550 Query 50308 GATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATACA 50367 |||| | | | || ||||| || | |||||||| || ||| | | || || || Sbjct 60551 GATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATT 60610 Query 50368 TTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGTAtttttttCTA 50427 | || | ||||| |||||| || |||| ||| ||| | || |||| || | Sbjct 60611 TCTGCCAAATATCTGGGAATTCAATTGGGAATAAAACAAATCTTCGAGGGTTTTCTTTCA 60670 Query 50428 ATATCGGTTC 50437 || ||||| Sbjct 60671 GTAAAGGTTC 60680 >seq4409 Length=33873 Score = 145 bits (160), Expect = 2e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 |||||||| || || | || |||||||| |||| || ||| || ||||||||||| || Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGA-ATATTATAATCGGA 17925 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| | || |||| |||||| || || ||||| |||||||| || || || || Sbjct 17924 CAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGG 17865 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || || || ||||| |||||||| |||| || |||| ||| || Sbjct 17864 AATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGAC 17805 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| ||||| || || ||||| || || | || ||||||||| Sbjct 17804 CTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATT 17756 >seq2259 Length=79244 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 |||||||||||||| | | | ||| || || | || | ||| || ||||||||| Sbjct 78056 ATAATACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAG 78115 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || || | || || |||| |||| |||||||||||||||||| || | ||||| || Sbjct 78116 TCGGAGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCT 78175 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || || |||||||| || || ||||| |||||||| || | || || | | Sbjct 78176 GGGGGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGT 78235 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || ||||| |||||||| | ||||| | || || ||||| Sbjct 78236 TCGACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 113 bits (124), Expect = 9e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || |||||||| || | ||| || ||| || || ||||| Sbjct 108814 CCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 108755 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || ||| |||| || | |||||| ||||| ||||| || ||||| ||||| || || Sbjct 108754 AGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 108695 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||||||||||| ||||| ||||| ||||||||| Sbjct 108694 ATTCCTTCTTTGTCTTGAATTTTGGCTTTTACATT 108660 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 || || ||||| || ||||| || || || || || || ||||| ||||| || || || Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||||||||| |||| || || | ||| ||||||||||||||||| || |||||| Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353 Query 192514 AATGTTTT 192521 | ||||| Sbjct 106352 AGGGTTTT 106345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984279493419600