Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4409 163 5e-35 seq2028 156 8e-33 seq2259 118 2e-21 seq1411 100 5e-16 >seq4409 Length=33873 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| ||||| | || |||||||| |||| || || |||||||||||| || Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| ||| |||| |||| |||||| || || || || |||||||| ||||| || || Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| || || || ||||| |||||||| ||||| || |||| ||| || Sbjct 17863 ATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACC 17804 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| ||||| || || ||||| || || | ||| ||||||||| Sbjct 17803 TCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATT 17756 >seq2028 Length=154558 Score = 156 bits (172), Expect = 8e-33 Identities = 355/527 (67%), Gaps = 9/527 (2%) Strand=Plus/Plus Query 38847 ACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAAT 38906 ||||| ||||| |||||||||||||| |||||| || || | ||||||| ||||| Sbjct 59791 ACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATAAAGTCAAAC 59850 Query 38907 GGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAATAATCTATCGGCCAC 38965 ||||| | | | || | ||||| | | | ||| || ||| || | ||| || || Sbjct 59851 GGATTCGTTGCACCAT-AGATTTTCTTGCAGCCTAATTCACTTAACAAACGATCAGCTAC 59909 Query 38966 AAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAATGGTAATGC 39025 |||||| | ||| || |||| |||| |||||||| || | | | | ||| || || Sbjct 59910 AAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACTGGCAAAGC 59969 Query 39026 ATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataattatattatt 39085 ||| | || |||| ||||||| || || | | ||| || | ||| | | Sbjct 59970 CTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTTACTCTTTC 60029 Query 39086 ttttgataatttatatttaatatgattcgcatataGTAAACATGCAAAATCCGTATGTAA 39145 || |||| ||| | | | ||| | ||||||| ||||||||||| ||||| Sbjct 60030 TTGTGATGGTTTCTGATGCA---GATGTGAGAATAGTAAGCATGCAAAATCACAATGTAG 60086 Query 39146 ACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTT 39205 |||||| || || ||||| |||||||| ||| ||||| || ||||| | || | || Sbjct 60087 ACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGACCACGTTT 60146 Query 39206 TTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAA 39265 || | ||| || || | |||||| |||| | || || || || || || ||||| Sbjct 60147 CTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACGGCAGCAAA 60206 Query 39266 TGCTATTATTCTTGCTCCAAAC-ATTAATTTATC-ATCTAAAATCCAATTTATGGCCCAA 39323 || | | |||| | || ||| | | || || | || |||||| |||| ||||||| Sbjct 60207 AGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCT--AATCCACTTTAGGGCCCAA 60264 Query 39324 TCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 || ||||| || || | | | || || |||| ||||| ||||| || Sbjct 60265 TCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAA 60311 >seq2259 Length=79244 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||||||||||||| | || | ||| || || | || | ||| || |||||||| Sbjct 78056 ATAATACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAG 78115 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | | || | || |||| ||||||||||||||| || || | |||||||| Sbjct 78116 TCGGAGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCT 78175 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || |||||||| || || ||||| |||||||| || || || || | | Sbjct 78176 GGGGGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGT 78235 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| |||||||| | ||||| | ||| || ||||| Sbjct 78236 TCGACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 100 bits (110), Expect = 5e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 || || |||||||| ||||| || ||||| || || || ||||| ||||| || || || Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||||||||| ||||| || || | ||| ||||||||||||||||| || |||||| Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353 Query 172047 AATGTTTT 172054 | ||||| Sbjct 106352 AGGGTTTT 106345 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || ||||||| | || |||| || | ||||||||||| || || | | Sbjct 105881 ATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAGATGAGACGT 105822 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| || || || ||||| || || || || || ||| || || ||||| Sbjct 105821 TGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTTTCGATAGTG 105762 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| ||||| | || |||||||||||||| | ||||| | ||| |||||| Sbjct 105761 TCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACGAAAATCTGC 105702 Query 172068 ATTTTATTATaaaaa 172082 ||| ||| | || || Sbjct 105701 ATTCTATAAAAATAA 105687 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/185 (71%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 171829 TTAGTTTCATAATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAA 171887 ||| |||| || | ||||| | ||| || | || |||||||| || | ||| || Sbjct 108829 TTAATTTCTTAGTTTCCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGG 108770 Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || || | || ||| | || || | |||||| ||||| || || || ||| Sbjct 108769 ATGTTGTAGTCAGAGAGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTC 108710 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || ||||||||||| ||||| ||||| ||||||||| |||||| Sbjct 108709 TGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTA 108650 Query 172008 TCTGA 172012 || || Sbjct 108649 TCGGA 108645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904956149476800