Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 114 4e-20
seq970 113 1e-19
seq4656 107 6e-18
seq820 107 6e-18
>seq2028
Length=154558
Score = 114 bits (126), Expect = 4e-20
Identities = 371/568 (65%), Gaps = 10/568 (2%)
Strand=Plus/Minus
Query 133073 AGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAA 133132
|| |||||| | ||||||||| | | || |||||||||| || || || ||
Sbjct 60653 AGATTTGTTTTATTCCCAATTGAATTCCCAGATATTTGGCAGAAATACAAGGAAGCTGAA 60594
Query 133133 GATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCC 133192
| || ||||||||| | ||||| || | || | || | | ||||||||
Sbjct 60593 GCTTCCTTTTGGACTACCGAGGAAGTGGACCTCACCCATGATCTACGACACTGGGAGAAA 60534
Query 133193 CTTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252
|| | || ||| |||||| ||||| | ||||| ||||||||||| |||
Sbjct 60533 CTGAAATCTGAAGAACGACATTTCATTTCGCACGTGTTAGCTTTTTTTGCTGCCTCAGAT 60474
Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312
|||||||| ||| ||| | | ||| || | |||||||||| || | |||||
Sbjct 60473 GGTATTGTAAATGAGAATCTTGTGGAACGTTTCAGTCAAGAAGTTCAAGTGACTGAAGCT 60414
Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACT 133372
||| |||||||| | |||||||| || ||||||||||||||| | || |
Sbjct 60413 CGTTGTTTTTATGGATTCCAGATTGCAATTGAAAATATCCATTCTGAAATGTACAGCAAA 60354
Query 133373 CTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--A 133430
|| ||||| || || |||| ||| || | || | | || ||||| ||| |
Sbjct 60353 CTTATTGAAACGTATATCAGCGATCCCAATGAAAAAGAGTTCTTGTTTAACGCTATTGAA 60294
Query 133431 GCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGAT--CCAGGACAA 133488
| | | || ||| |||| |||||| |||| ||||| | || ||||| | || ||
Sbjct 60293 ACCA--TGCCGTGTGTTAAGAAGAAAGCTGATTGGGCCCTAAAGTGGATTAGCTCGA-AA 60237
Query 133489 GCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAG 133548
| | | ||| || | | | || |||||||||| || || ||||||||||||||
Sbjct 60236 ACATCCTCGTTCGGCGA-AAGATTGGTGGCTTTTGCTGCCGTTGAAGGCATTTTTTTCAG 60178
Query 133549 TGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTT 133607
|||| | | ||| | ||||| ||| | || || |||||| || | || || | |
Sbjct 60177 TGGT-AGCTTTGCAGCGATTTTCTGGTTAAAGAAACGTGGTCTTATGCCCGGTTTAACAT 60119
Query 133608 TTTCTAACGAACTTATTTCAAGGGACGA 133635
|||| || ||| | || || || || ||
Sbjct 60118 TTTCAAATGAATTGATATCCAGAGATGA 60091
>seq970
Length=61088
Score = 113 bits (124), Expect = 1e-19
Identities = 211/307 (69%), Gaps = 6/307 (2%)
Strand=Plus/Minus
Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633
||||||| || || | |||||| ||||||||||| ||| | ||||||||||| ||
Sbjct 6630 TTCCATAGCTTTTATAAGACGACGTTGAATATAACCGGTTTCTGCAGTTTTTACAGCAGT 6571
Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693
|||||| ||||| ||||||||||||||||||| || | | ||| || | ||
Sbjct 6570 ATCAATAAGACCCTCACGACCACCCATAGCATGAAAATAAAATTCTGAAGGGGTCAAACC 6511
Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750
||| | | ||| |||| || ||||| || || || || ||||||| ||| |
Sbjct 6510 TGCAAGATACGAGTTCTCTACAAAACCCTTCGATTCAGGACCGTAATCGTC---TTTGAT 6454
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
|| || || | | || || | ||| | |||||||||||||| || ||||| ||
Sbjct 6453 GAAATGAGGTAAACTTCTTTTTCGGAAACCGAACGGGATACGCTTTCCTTCTACGTTTTG 6394
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATT 302870
|||||||| || | ||| | || ||||| || | || || ||||| ||||
Sbjct 6393 CTGTCCCACACAAGCAATAACTTGGGAAATGTTAATATTGGAACCTTTGGAACCAGAGAC 6334
Query 302871 TACCATA 302877
|||||||
Sbjct 6333 TACCATA 6327
>seq4656
Length=6745
Score = 107 bits (118), Expect = 6e-18
Identities = 235/352 (67%), Gaps = 0/352 (0%)
Strand=Plus/Plus
Query 59990 CCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATAA 60049
||||| |||||||| | | ||||| | |||| |||||| ||||| || ||||| ||
Sbjct 5430 CCAGTTCCAATACCATCAGCACCATTTACCAGAACCATCGGAATAATGGGTATATACCAA 5489
Query 60050 ACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTTCG 60109
|| || |||| | | | |||||| | | | ||||| || ||| || ||
Sbjct 5490 ACGGGTTCAATTTTCTGATTATCATCATATTCATGTGTTAGAAGGGCGTCATCGTTTGGA 5549
Query 60110 GGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTGCG 60169
||||||| || || | || | || ||| |||||||| ||| | ||| | |
Sbjct 5550 TGAAATATCAAACGTGTCAGTGGAGACATTTTTGTAAAAATATATCTCGCACTTGCAGAG 5609
Query 60170 TCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTG 60229
||||| || ||||| | |||||| |||||||| || ||| | |||| |||||| ||
Sbjct 5610 TCCTTTCCGCCCATTAAACGGGTACCAAATTGACCACGTGGTTCCAATAAATTAATATTA 5669
Query 60230 TTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCG 60289
|| || || ||||||||||| ||| || || | || | | ||||||||
Sbjct 5670 TTGCTTCCGACAAAATTTTGAGCAAGATTCACGATGGTCGCACAGAGAGATACTTCACCG 5729
Query 60290 TGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAA 60341
|||||||| | |||||||| | || | ||| | ||| || |||||||
Sbjct 5730 TGATGATAGGCCGAATGTTCAGCTACTGAACCAGCCAGTTGGGCAACTTTAA 5781
>seq820
Length=22770
Score = 107 bits (118), Expect = 6e-18
Identities = 233/348 (67%), Gaps = 3/348 (1%)
Strand=Plus/Minus
Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCG 156082
||| |||| ||| ||||| ||| ||| || || ||||||||||| |||||
Sbjct 19961 TGGTTCCAAATAAATAGCGAAAGCTCCAGGTCTTTTATTACCACCCTGATCCACATATTT 19902
Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142
||||| ||||| || || |||||||||| | |||||||||||||||||| || ||
Sbjct 19901 GGCAGTATTATTAAACACTTTAAGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCC 19842
Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202
||||| | || || | || |||||||| || || ||||| || ||||
Sbjct 19841 AGCAATATAAGTGCCTTGTGCTCTAATATTATGAACATTTACACCAATTCCTCCTGCATT 19782
Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262
||| ||||| ||| |||| | | | ||| |||| || |||| | ||| ||
Sbjct 19781 TTTTGAAATGATAGCACATTGAGTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGG 19722
Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322
||| ||| | | || ||| ||||| |||| |||||| | || || |||| ||
Sbjct 19721 CATCATTAGCAAGAAACAAGAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGT 19662
Query 156323 AGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370
||| | ||||| | ||||| || | || | ||||| ||| || ||
Sbjct 19661 AGGACTGGCATGCGTGAAATATTTTTGTGATAGATAATTGTAAGTTTC 19614
Score = 91.5 bits (100), Expect = 4e-13
Identities = 224/332 (67%), Gaps = 7/332 (2%)
Strand=Plus/Minus
Query 155414 ACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTT 155473
||| |||| ||| ||||||| || | ||| || | |||| | || ||||| ||
Sbjct 21555 ACCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTG-CTTCTGGTA 21497
Query 155474 T-GGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGT 155532
|||||| | || | ||| ||||| ||||| || ||| || || || || || | |
Sbjct 21496 GAGGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATAT 21437
Query 155533 CTGCTAATTTCACATAGTCAAA--TGTTT-TATCCTCATTTACAAACATACCAAGACCAA 155589
| | ||| || | ||||| | ||| |||| |||| |||||||| | | |
Sbjct 21436 TTTTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTA 21377
Query 155590 TAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAG 155648
| || ||||||||||| || ||| | || | | || || |||||||||| || ||| |
Sbjct 21376 TTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACG-TGTATTCTACGATTTCAGAA 21318
Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708
|| |||||| | || || || || ||||| || |||||||| || || |||||
Sbjct 21317 CAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCG 21258
Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTC 155740
|| ||||| || || || || || || || ||
Sbjct 21257 TCTTTGTAAAGCATATAAGGAGTACCAGTTTC 21226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471517838588952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |