Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2028 114 4e-20 seq970 113 1e-19 seq4656 107 6e-18 seq820 107 6e-18 >seq2028 Length=154558 Score = 114 bits (126), Expect = 4e-20 Identities = 371/568 (65%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 133073 AGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAA 133132 || |||||| | ||||||||| | | || |||||||||| || || || || Sbjct 60653 AGATTTGTTTTATTCCCAATTGAATTCCCAGATATTTGGCAGAAATACAAGGAAGCTGAA 60594 Query 133133 GATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCC 133192 | || ||||||||| | ||||| || | || | || | | |||||||| Sbjct 60593 GCTTCCTTTTGGACTACCGAGGAAGTGGACCTCACCCATGATCTACGACACTGGGAGAAA 60534 Query 133193 CTTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 || | || ||| |||||| ||||| | ||||| ||||||||||| ||| Sbjct 60533 CTGAAATCTGAAGAACGACATTTCATTTCGCACGTGTTAGCTTTTTTTGCTGCCTCAGAT 60474 Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 |||||||| ||| ||| | | ||| || | |||||||||| || | ||||| Sbjct 60473 GGTATTGTAAATGAGAATCTTGTGGAACGTTTCAGTCAAGAAGTTCAAGTGACTGAAGCT 60414 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACT 133372 ||| |||||||| | |||||||| || ||||||||||||||| | || | Sbjct 60413 CGTTGTTTTTATGGATTCCAGATTGCAATTGAAAATATCCATTCTGAAATGTACAGCAAA 60354 Query 133373 CTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--A 133430 || ||||| || || |||| ||| || | || | | || ||||| ||| | Sbjct 60353 CTTATTGAAACGTATATCAGCGATCCCAATGAAAAAGAGTTCTTGTTTAACGCTATTGAA 60294 Query 133431 GCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGAT--CCAGGACAA 133488 | | | || ||| |||| |||||| |||| ||||| | || ||||| | || || Sbjct 60293 ACCA--TGCCGTGTGTTAAGAAGAAAGCTGATTGGGCCCTAAAGTGGATTAGCTCGA-AA 60237 Query 133489 GCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAG 133548 | | | ||| || | | | || |||||||||| || || |||||||||||||| Sbjct 60236 ACATCCTCGTTCGGCGA-AAGATTGGTGGCTTTTGCTGCCGTTGAAGGCATTTTTTTCAG 60178 Query 133549 TGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTT 133607 |||| | | ||| | ||||| ||| | || || |||||| || | || || | | Sbjct 60177 TGGT-AGCTTTGCAGCGATTTTCTGGTTAAAGAAACGTGGTCTTATGCCCGGTTTAACAT 60119 Query 133608 TTTCTAACGAACTTATTTCAAGGGACGA 133635 |||| || ||| | || || || || || Sbjct 60118 TTTCAAATGAATTGATATCCAGAGATGA 60091 >seq970 Length=61088 Score = 113 bits (124), Expect = 1e-19 Identities = 211/307 (69%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| || || | |||||| ||||||||||| ||| | ||||||||||| || Sbjct 6630 TTCCATAGCTTTTATAAGACGACGTTGAATATAACCGGTTTCTGCAGTTTTTACAGCAGT 6571 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 |||||| ||||| ||||||||||||||||||| || | | ||| || | || Sbjct 6570 ATCAATAAGACCCTCACGACCACCCATAGCATGAAAATAAAATTCTGAAGGGGTCAAACC 6511 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 ||| | | ||| |||| || ||||| || || || || ||||||| ||| | Sbjct 6510 TGCAAGATACGAGTTCTCTACAAAACCCTTCGATTCAGGACCGTAATCGTC---TTTGAT 6454 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || || | | || || | ||| | |||||||||||||| || ||||| || Sbjct 6453 GAAATGAGGTAAACTTCTTTTTCGGAAACCGAACGGGATACGCTTTCCTTCTACGTTTTG 6394 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATT 302870 |||||||| || | ||| | || ||||| || | || || ||||| |||| Sbjct 6393 CTGTCCCACACAAGCAATAACTTGGGAAATGTTAATATTGGAACCTTTGGAACCAGAGAC 6334 Query 302871 TACCATA 302877 ||||||| Sbjct 6333 TACCATA 6327 >seq4656 Length=6745 Score = 107 bits (118), Expect = 6e-18 Identities = 235/352 (67%), Gaps = 0/352 (0%) Strand=Plus/Plus Query 59990 CCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATAA 60049 ||||| |||||||| | | ||||| | |||| |||||| ||||| || ||||| || Sbjct 5430 CCAGTTCCAATACCATCAGCACCATTTACCAGAACCATCGGAATAATGGGTATATACCAA 5489 Query 60050 ACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTTCG 60109 || || |||| | | | |||||| | | | ||||| || ||| || || Sbjct 5490 ACGGGTTCAATTTTCTGATTATCATCATATTCATGTGTTAGAAGGGCGTCATCGTTTGGA 5549 Query 60110 GGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTGCG 60169 ||||||| || || | || | || ||| |||||||| ||| | ||| | | Sbjct 5550 TGAAATATCAAACGTGTCAGTGGAGACATTTTTGTAAAAATATATCTCGCACTTGCAGAG 5609 Query 60170 TCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTG 60229 ||||| || ||||| | |||||| |||||||| || ||| | |||| |||||| || Sbjct 5610 TCCTTTCCGCCCATTAAACGGGTACCAAATTGACCACGTGGTTCCAATAAATTAATATTA 5669 Query 60230 TTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCG 60289 || || || ||||||||||| ||| || || | || | | |||||||| Sbjct 5670 TTGCTTCCGACAAAATTTTGAGCAAGATTCACGATGGTCGCACAGAGAGATACTTCACCG 5729 Query 60290 TGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAA 60341 |||||||| | |||||||| | || | ||| | ||| || ||||||| Sbjct 5730 TGATGATAGGCCGAATGTTCAGCTACTGAACCAGCCAGTTGGGCAACTTTAA 5781 >seq820 Length=22770 Score = 107 bits (118), Expect = 6e-18 Identities = 233/348 (67%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCG 156082 ||| |||| ||| ||||| ||| ||| || || ||||||||||| ||||| Sbjct 19961 TGGTTCCAAATAAATAGCGAAAGCTCCAGGTCTTTTATTACCACCCTGATCCACATATTT 19902 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 ||||| ||||| || || |||||||||| | |||||||||||||||||| || || Sbjct 19901 GGCAGTATTATTAAACACTTTAAGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCC 19842 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 ||||| | || || | || |||||||| || || ||||| || |||| Sbjct 19841 AGCAATATAAGTGCCTTGTGCTCTAATATTATGAACATTTACACCAATTCCTCCTGCATT 19782 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 ||| ||||| ||| |||| | | | ||| |||| || |||| | ||| || Sbjct 19781 TTTTGAAATGATAGCACATTGAGTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGG 19722 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 ||| ||| | | || ||| ||||| |||| |||||| | || || |||| || Sbjct 19721 CATCATTAGCAAGAAACAAGAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGT 19662 Query 156323 AGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 ||| | ||||| | ||||| || | || | ||||| ||| || || Sbjct 19661 AGGACTGGCATGCGTGAAATATTTTTGTGATAGATAATTGTAAGTTTC 19614 Score = 91.5 bits (100), Expect = 4e-13 Identities = 224/332 (67%), Gaps = 7/332 (2%) Strand=Plus/Minus Query 155414 ACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTT 155473 ||| |||| ||| ||||||| || | ||| || | |||| | || ||||| || Sbjct 21555 ACCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTG-CTTCTGGTA 21497 Query 155474 T-GGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGT 155532 |||||| | || | ||| ||||| ||||| || ||| || || || || || | | Sbjct 21496 GAGGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATAT 21437 Query 155533 CTGCTAATTTCACATAGTCAAA--TGTTT-TATCCTCATTTACAAACATACCAAGACCAA 155589 | | ||| || | ||||| | ||| |||| |||| |||||||| | | | Sbjct 21436 TTTTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTA 21377 Query 155590 TAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAG 155648 | || ||||||||||| || ||| | || | | || || |||||||||| || ||| | Sbjct 21376 TTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACG-TGTATTCTACGATTTCAGAA 21318 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 || |||||| | || || || || ||||| || |||||||| || || ||||| Sbjct 21317 CAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCG 21258 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTC 155740 || ||||| || || || || || || || || Sbjct 21257 TCTTTGTAAAGCATATAAGGAGTACCAGTTTC 21226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471517838588952