Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2259 140 3e-28 seq4409 122 8e-23 seq820 96.9 3e-15 seq1411 89.7 5e-13 >seq2259 Length=79244 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || || | ||||| || || ||||| || || || || || || ||| | Sbjct 78291 ACGATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCA 78232 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | |||| ||||| || || || ||||||||||| || || || || Sbjct 78231 TCCGACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGAC 78172 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 |||||||||||||||||||| || ||||| ||||||||| | | | | || || ||| Sbjct 78171 CAACAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTAT 78112 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || || |||||||| | ||||| | || || Sbjct 78111 AATATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGG 78062 >seq4409 Length=33873 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || || |||| || || || || || || || || ||| | Sbjct 17754 ACAATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCG 17813 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | |||| ||||| ||| || || ||||| |||||||| || || || Sbjct 17814 TCGGACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGAC 17873 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||| ||||| ||||| ||||| || | | |||| |||||| Sbjct 17874 CAGCAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTAT 17933 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || |||||||||||||| || |||| |||||| | ||| || | || |||| Sbjct 17934 AATATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGGCG 17985 >seq820 Length=22770 Score = 96.9 bits (106), Expect = 3e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCT 139121 ||||| |||| ||| || || || | || || || || | ||||||||| | || | Sbjct 21395 ACAAACATGTTCACAGGTATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACG-T 21337 Query 139122 GTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATT 139181 |||||| || ||||| | ||| | ||||| | || ||| || || || | |||||| Sbjct 21336 GTATTCTACGATTTCAGAACAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATT 21277 Query 139182 GCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 ||||| || ||||| ||||||||||||||||| || || |||||||| ||||| Sbjct 21276 AGATTTTCTATTGCAAGCGTCTTTGTAAAGCATATAAGGAGTACCAGTTTCTACTTG 21220 >seq1411 Length=135556 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||| || | |||| |||||| || || ||||||||||||||||| ||||| |||| Sbjct 108646 CCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGATC 108705 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | |||||||| || || ||||| || || ||| | | | || || || | Sbjct 108706 AGCAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACA 108765 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| |||||||| || || |||| |||||| Sbjct 108766 ACATCCAAAAGGAGTCCACCTTACATTTGGTG 108797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449808205346880