Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2259 140 3e-28
seq4409 122 8e-23
seq820 96.9 3e-15
seq1411 89.7 5e-13
>seq2259
Length=79244
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|||||||| || || | ||||| || || ||||| || || || || || || ||| |
Sbjct 78291 ACGATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCA 78232
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
||||||| | |||| ||||| || || || ||||||||||| || || || ||
Sbjct 78231 TCCGACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGAC 78172
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|||||||||||||||||||| || ||||| ||||||||| | | | | || || |||
Sbjct 78171 CAACAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTAT 78112
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || |||||||| || || || |||||||| | ||||| | || ||
Sbjct 78111 AATATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGG 78062
>seq4409
Length=33873
Score = 122 bits (134), Expect = 8e-23
Identities = 166/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| |||||||| || | || || |||| || || || || || || || || ||| |
Sbjct 17754 ACAATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCG 17813
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | |||| ||||| ||| || || ||||| |||||||| || || ||
Sbjct 17814 TCGGACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGAC 17873
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || | |||||||| ||||| ||||| ||||| || | | |||| ||||||
Sbjct 17874 CAGCAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTAT 17933
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932
|| |||||||||||||| || |||| |||||| | ||| || | || ||||
Sbjct 17934 AATATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGGCG 17985
>seq820
Length=22770
Score = 96.9 bits (106), Expect = 3e-15
Identities = 129/177 (73%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCT 139121
||||| |||| ||| || || || | || || || || | ||||||||| | || |
Sbjct 21395 ACAAACATGTTCACAGGTATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACG-T 21337
Query 139122 GTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATT 139181
|||||| || ||||| | ||| | ||||| | || ||| || || || | ||||||
Sbjct 21336 GTATTCTACGATTTCAGAACAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATT 21277
Query 139182 GCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238
||||| || ||||| ||||||||||||||||| || || |||||||| |||||
Sbjct 21276 AGATTTTCTATTGCAAGCGTCTTTGTAAAGCATATAAGGAGTACCAGTTTCTACTTG 21220
>seq1411
Length=135556
Score = 89.7 bits (98), Expect = 5e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
|||| || | |||| |||||| || || ||||||||||||||||| ||||| ||||
Sbjct 108646 CCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGATC 108705
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881
| || | |||||||| || || ||||| || || ||| | | | || || || |
Sbjct 108706 AGCAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACA 108765
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913
|||| |||||||| || || |||| ||||||
Sbjct 108766 ACATCCAAAAGGAGTCCACCTTACATTTGGTG 108797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449808205346880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |