Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4409 163 2e-35 seq1411 107 1e-18 >seq4409 Length=33873 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| || ||||||||||| | || ||||| |||||||| |||||||| | Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || ||||||||||| || | |||||||| ||||| || |||||| Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || |||||||| || ||| |||| | |||||| || |||| || Sbjct 17863 ATTCCTTCCTTGTCCTG-AATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGAC 17805 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || || ||||| |||||||| || || || ||||||||| Sbjct 17804 CTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATT 17756 >seq1411 Length=135556 Score = 107 bits (118), Expect = 1e-18 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | |||||||||||||| || || |||||||| || || || || ||| || Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTG-AATCTT 106414 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||| ||| |||| | |||||| ||| |||| ||||| ||||| || || |||||||| Sbjct 106413 GGCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGT 106354 Query 29763 TAAGGTTTTAACA 29775 || |||||| ||| Sbjct 106353 TAGGGTTTTCACA 106341 Score = 107 bits (118), Expect = 1e-18 Identities = 122/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| | ||||| || ||||| ||||| || || | | || || Sbjct 108803 ACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCC 108744 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | ||||| || |||||||| || ||||| || ||||| Sbjct 108743 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTT 108684 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAA 29730 |||||| |||||| | ||| ||| |||| | ||| || ||| Sbjct 108683 GTCTTG-AATTTTGGCTTTTACATTTTCAATAGTATCGGAA 108644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385144570521336