Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq820 114 1e-20 seq2259 100 3e-16 seq1411 96.9 3e-15 >seq820 Length=22770 Score = 114 bits (126), Expect = 1e-20 Identities = 230/340 (68%), Gaps = 12/340 (4%) Strand=Plus/Minus Query 151114 ACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAAT 151173 ||||||||| ||||| ||||| || | ||| | | |||| || |||| ||| | | Sbjct 21555 ACCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAG 21496 Query 151174 AGGGTAGAAATTGCGATCAATAATTTTATTCAAA---CTATTCACTACATGTTTGACCAC 151230 |||||| | || ||| ||||| |||||||| ||| |||||| | ||| Sbjct 21495 AGGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGAT--- 21439 Query 151231 AGTGTGCAATAGTTGAAAATCAAAAGT------ATCATTATTGATATATTTATTGACGGC 151284 | | | | | || |||||||||| | ||| ||| | | | | || || | Sbjct 21438 ATTTTTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGG 21379 Query 151285 AATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGC 151344 || || || |||||||| || ||| |||||||||||| |||| ||| ||||| | Sbjct 21378 TATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGA 21319 Query 151345 ACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGC 151404 ||| | || |||| |||||||| ||| | || ||||||| ||| | |||||||| Sbjct 21318 ACAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGC 21259 Query 151405 GTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 151444 ||| ||||| | ||| || || || || ||||| ||||| Sbjct 21258 GTCTTTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGA 21219 >seq2259 Length=79244 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 || || ||||||||||||||| |||||| |||||| || || || || || ||||||||| Sbjct 78134 TCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTTG 78193 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || |||||| |||| | ||| | ||||| | ||||| || |||| || | Sbjct 78194 TCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGATG 78253 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || || | ||||| ||||| |||||||| Sbjct 78254 GTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 137221 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 137280 ||||||||||||||||| || | |||| |||||| || ||||||||||| || Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 137281 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 137340 || |||||||| || || || || || ||||| ||||| ||| ||| ||| | | | Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 137341 TCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 137400 || | ||||| | ||||| ||||| | || | || || || || | ||||| ||| Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 137401 AATATTTGCAT 137411 || || ||||| Sbjct 105710 AAAATCTGCAT 105700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488446926307200