Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4409 178 3e-39 seq2259 143 5e-29 seq1411 143 5e-29 >seq4409 Length=33873 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| || || || || || | |||||||| || || ||||||||||| || Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | |||||||| |||||||| || || ||||| | ||| || || ||||| || Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || ||||| ||||| |||||||||||||| || || ||||| || Sbjct 17863 ATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACC 17804 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || |||||||| || || |||||||| || ||||||||| Sbjct 17803 TCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATT 17756 >seq2259 Length=79244 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || |||||||| || || || || || |||||||| || | Sbjct 78060 TACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGG 78119 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || |||||||| ||||||||||| | | |||||| ||||| | Sbjct 78120 AGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 78179 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || ||||| || || |||||||||||||| || || ||||| | Sbjct 78180 GGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGA 78239 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || || | || || || || || ||||| Sbjct 78240 CCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 143 bits (158), Expect = 5e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 ||||| ||||| || || || ||||| | | |||||||| || ||||| ||||| ||| Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | |||||| ||||| || || |||||||| || |||||||||||||| || ||| Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || || || || |||||| |||||||| || || || || || || | || || || Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 82800 AATATCTGCATT 82811 || ||||||||| Sbjct 105710 AAAATCTGCATT 105699 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || | || || || || || || || || ||||| ||| | | || Sbjct 108803 ACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCC 108744 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| |||||||||||||| ||||| | || || ||||||||||| |||||||| || Sbjct 108743 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTT 108684 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 |||||||| || ||||||||||||||||| ||||| Sbjct 108683 GTCTTGAATTTTGGCTTTTACATTTTCAATAGTATC 108648 Score = 122 bits (134), Expect = 2e-22 Identities = 106/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| ||||| || | |||||| || |||||||| || ||||||||||| |||||||| Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||||||||||||||| || || |||||| ||||| | ||| || |||||||| || Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353 Query 82788 AACGTCTTTACA 82799 | || || ||| Sbjct 106352 AGGGTTTTCACA 106341 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757 || || |||||||| || |||||||| || |||||||| |||||||| || || ||| Sbjct 108003 GGGGGAATTCCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATGGTGTCTGAGGGT 107944 Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 |||||||| || || || |||||||| |||| || ||||| || ||| Sbjct 107943 TCTACTTCTAATGTAATTGTCTTGCCAGTCAGGGTTTTTACGAAAATC 107896 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | | ||| ||||| || || |||||||| || ||||| || || || Sbjct 108334 CCTCCTCTCAATCTTAAAACCAAGTGGAGGGTGGATTCTTTTTGAATATTGTAGTCTGAA 108275 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 || | | ||| ||||| | |||||||||||| ||||||| | ||||||| Sbjct 108274 AGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAGATTAAACGTTGTTGA 108224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981627233708744