Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4438 107 3e-18 >seq4438 Length=69644 Score = 107 bits (118), Expect = 3e-18 Identities = 366/563 (65%), Gaps = 22/563 (4%) Strand=Plus/Plus Query 182752 TGGTTACATTTTGGACATGTATCTCCACAACGTGTTGCTTTAGAAGTATTAAAATGTATA 182811 ||||| ||||||||||| | || | ||||| || ||| | |||||| ||| | | Sbjct 6526 TGGTTGAATTTTGGACATATTTCGGCTCAACGAGTAGCTCTGGAAGTA-CAAAGTTT--- 6581 Query 182812 CGAGAAAAC-aaaaaaaaC-----GTTGAAACGTTTATAGATGAAATAATTGTAAGAAGA 182865 |||||| | | |||| || || | |||| | || || | || ||| | ||| Sbjct 6582 --GGAAAACGTACATAAACTTCCGGTAGATAGGTTTCTTGAAGAGCTCATAGTACGTAGA 6639 Query 182866 GAACTATCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGT-TCAGTCTACTCA 182924 ||| | | ||||| | |||| ||| ||||| ||||||| | | || | | || Sbjct 6640 GAATTGGCAGATAACTATTGTCTCTACAATAATAATTACGACAACATAAAAGGCGCCGCA 6699 Query 182925 CGCATGGGCTAGAAGAACATTAGAAGATCACGTTAATGATCCTAGAAAGTATATCTATTC 182984 | ||||||| || ||||||| ||||| | | ||| || || || || ||||| Sbjct 6700 -GAATGGGCTCAAAAAACATTACTCGATCATGCAATTGACAAAAGGAATTACATTTATTC 6758 Query 182985 TATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACA 183044 | | || | || | ||| | ||||| ||| | |||||||| | |||| ||| Sbjct 6759 GAGACGAGAATTTGAGATGGCTAAGACACACGACTTAATTTGGAATGCGGCTCAAAAACA 6818 Query 183045 GATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACT 183104 | | ||||| ||||| ||| | | | || ||||||||| |||||| || || Sbjct 6819 GCTCCGTGTCGAAGGTAAAATACATGGGTACATGCGTATGTACTGGTGTAAAAAAATTCT 6878 Query 183105 TGAATGGACAAGAACTCCGGAAGATGCTTT-GAGTT---ATAGTATCTATATGAACAATA 183160 |||||||| || ||| || | ||||| || | || || ||| ||| || Sbjct 6879 GGAATGGACGGAAAGTCCAGACAAAGCTTTAGAAATTGCATTGTGGCTAAATG----ATG 6934 Query 183161 AGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCG 183220 |||| | || || | ||||| ||||||| || || |||||||| ||||| | Sbjct 6935 TATACGCTTTGGATGGAAACGATCCGAACGGATTTGTTGGAGTGATGTGGTCGATTTGTG 6994 Query 183221 GATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATT 183280 | | |||||| || |||||||| || || |||||||| ||| | |||||| | Sbjct 6995 GTGTCCACGATCAAGGTTGGAAAGAGCGAAAAATTTTTGGAAAAATACGTTATATGGTTG 7054 Query 183281 ATGAGAGTTCTAAGAAGAAATTT 183303 || | ||| |||| ||||||| Sbjct 7055 ATTACAGTCTGAAGAGGAAATTT 7077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903231692194560