Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4409 96.9 3e-15 seq1411 93.3 4e-14 seq820 91.5 1e-13 >seq4409 Length=33873 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| ||| || || || || ||||| |||||| || || ||| || || Sbjct 17962 AAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCCAGT 17903 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| ||| | || | | ||||||||| || || || ||||||||||| ||| Sbjct 17902 TGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCC-TGAAT 17844 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||||| || | | |||| ||||| | || || || || | |||| ||| ||||| Sbjct 17843 TTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCC 17784 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || | || ||||||||||||||||| Sbjct 17783 CGTTAAGGTCTTTACGAAAATCTGCAT 17757 >seq1411 Length=135556 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||| || || ||| | ||||| || || ||||| || ||||| |||||||| Sbjct 105855 GTCTTCAAGCTGTTTACCAGCGAAGATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTT 105796 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| || | | || | ||||||| || || || || | |||| Sbjct 105795 GTCCTGAATCTTTGCTTTCACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGAT 105736 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || || ||||| |||||||||||||| Sbjct 105735 GGTTTTACCAGTAAGGGTTTTCACGAAAATCTGCAT 105700 >seq820 Length=22770 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 |||||| | || || || ||||| || || || | || || || | |||| ||||| Sbjct 21387 GTTCACAGGTATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTAC 21328 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 ||| || | || || || |||| ||| ||||| |||| |||||||||||| || || Sbjct 21327 GATTTCAGAACAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCT 21268 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 ||||| ||||| ||||| ||||| || || |||||||| || || Sbjct 21267 ATTGCAAGCGTCTTTGTAAAGCATATAAGGAGTACCAGTTTCTACTTG 21220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483324744287040