Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq4409 96.9 3e-15
seq1411 93.3 4e-14
seq820 91.5 1e-13
>seq4409
Length=33873
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
||||||| ||| || || || || ||||| |||||| || || ||| || ||
Sbjct 17962 AAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCCAGT 17903
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|| ||||| ||| | || | | ||||||||| || || || ||||||||||| |||
Sbjct 17902 TGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCC-TGAAT 17844
Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|||||| || | | |||| ||||| | || || || || | |||| ||| |||||
Sbjct 17843 TTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCC 17784
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| | || |||||||||||||||||
Sbjct 17783 CGTTAAGGTCTTTACGAAAATCTGCAT 17757
>seq1411
Length=135556
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||| || ||||| || || ||| | ||||| || || ||||| || ||||| ||||||||
Sbjct 105855 GTCTTCAAGCTGTTTACCAGCGAAGATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTT 105796
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| || | | || | ||||||| || || || || | ||||
Sbjct 105795 GTCCTGAATCTTTGCTTTCACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGAT 105736
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||||| || || || ||||| ||||||||||||||
Sbjct 105735 GGTTTTACCAGTAAGGGTTTTCACGAAAATCTGCAT 105700
>seq820
Length=22770
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873
|||||| | || || || ||||| || || || | || || || | |||| |||||
Sbjct 21387 GTTCACAGGTATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTAC 21328
Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933
||| || | || || || |||| ||| ||||| |||| |||||||||||| || ||
Sbjct 21327 GATTTCAGAACAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCT 21268
Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981
||||| ||||| ||||| ||||| || || |||||||| || ||
Sbjct 21267 ATTGCAAGCGTCTTTGTAAAGCATATAAGGAGTACCAGTTTCTACTTG 21220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483324744287040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |