Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq820 140 8e-28 >seq820 Length=22770 Score = 140 bits (154), Expect = 8e-28 Identities = 135/171 (79%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 110829 GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAA 110888 |||||| ||||| | |||||||||||||| | |||||| | ||||||||||||||| Sbjct 20933 GAAGAATTGAGAGCCAGAGATTTATTTTATGCCCTATGGATTCCGGATTTATTCATGAAA 20992 Query 110889 CGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCT 110948 || ||| || | |||| | ||||| || ||||||||||||| || |||||||| || Sbjct 20993 CGAGTTGAATCAGATGGAGTATGGTCGCTGATGTGTCCTCATCAATCCCCTGGTCTTTCG 21052 Query 110949 GATGTATATGGAAAAGAGTTTGAAGACCTT-TACGAAAAATATGAAAAAGA 110998 ||| ||||| ||||| || ||| || || |||||||| ||||||||||| Sbjct 21053 GATTGCTATGGTAAAGAATTCGAA-ACGTTATACGAAAAGTATGAAAAAGA 21102 Score = 132 bits (146), Expect = 1e-25 Identities = 288/424 (68%), Gaps = 8/424 (2%) Strand=Plus/Plus Query 110400 GGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAG 110459 || ||||||||| | || ||| | || | ||||||| ||| || ||| | | ||| Sbjct 19581 GGCATTCATGGAGAGGACATTGAGGCCGCTATTGAAACTTACAAT-TATCTATCACAAAA 19639 Query 110460 AAAGCT-ATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGC 110518 | | | | ||||| | |||||| ||||||| |||| || || ||||||| | Sbjct 19640 ATATTTCACGCATGCCAGTCCTACGTTATTTAATGCAGCTACACCAAGACCACAATTGTC 19699 Query 110519 TTCTTGCTTTCTT-CTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTA 110577 |||||| |||||| ||| || || ||| | |||| || ||||| | ||| | Sbjct 19700 TTCTTG-TTTCTTGCTAATGATGCCTGAGGATAGTCTTGAGGGAATTTACAAGTGTCTCA 19758 Query 110578 AAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTC 110637 || |||| | ||||| ||||| | |||||||||||| | | |||||| ||||| Sbjct 19759 CTCAATGTGCTATCATTTCAAAAAATGCAGGAGGAATTGGTGTAAATGTTCATAATATTA 19818 Query 110638 GCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGT 110697 | || |||| | |||| || | || || |||| | ||| || ||||| ||| Sbjct 19819 GAGCACAAGGCACTTATATTGCTGGCACAAATGGCACTTCCAATGGTCTCGTTCCTATGC 19878 Query 110698 TAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCT 110754 | | ||| || || | ||||| ||||||||| |||| ||||| ||| ||| ||| Sbjct 19879 TTAAAGTGTTTAATAATACTGCCAAATATGTGGATCAGGGTGGTAATAAAAGACCTGGAG 19938 Query 110755 CATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA 110814 | || ||||| ||| | ||||| |||||| | ||| | ||||| || || ||| || | Sbjct 19939 CTTTCGCTATTTATTTGGAACCATGGCATGCGGATGTTTTTGACTT-TTTGAATCTCAAA 19997 Query 110815 AAAA 110818 |||| Sbjct 19998 AAAA 20001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186571084804056