Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq2259 136 3e-27
seq4409 125 5e-24
seq1411 105 4e-18
>seq2259
Length=79244
Score = 136 bits (150), Expect = 3e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| | | ||||| || || ||| ||| ||||| || || || |||||
Sbjct 78061 ACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGA 78120
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| | || |||| |||||| || ||||| |||||||| || || ||| | ||
Sbjct 78121 GAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGG 78180
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||||||||| ||||||| | | |||| || | ||||||| || ||| |
Sbjct 78181 GATACCTTCTTTGTCCTGAATTTTC-GCCTTTACATTTTCAATGGTGTCGGATGGTTCGA 78239
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
| |||| ||||| || ||||| || | ||||| || || || ||||| ||
Sbjct 78240 CCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCATCGT 78291
>seq4409
Length=33873
Score = 125 bits (138), Expect = 5e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||||| || | ||||||||||| || || ||||| || || ||||||||
Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| |||| |||| |||||| ||||| || ||||| | |||||| ||| ||||
Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| |||||| || | |||| || | ||||| | ||| ||
Sbjct 17863 ATTCCTTCCTTGTCCTGAATTTT-TGCCTTTACATTTTCAATAGTGTCCGACGGTTCGAC 17805
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
|||| ||||| || || || ||||| || ||||| || |||||||| ||
Sbjct 17804 CTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATTGT 17754
>seq1411
Length=135556
Score = 105 bits (116), Expect = 4e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||||||||||| ||| ||| ||||| |||||||| || |||
Sbjct 108814 CCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 108755
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || ||| | || || | ||||||||| || || ||||| | |||||||||| | ||
Sbjct 108754 AGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 108695
Query 33643 ACACCTTCTTTGTCGGCAATTTT 33665
| ||||||||||| ||||||
Sbjct 108694 ATTCCTTCTTTGTCTTGAATTTT 108672
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
||||||||||||||||| || || || ||||| |||| || | ||||| || || ||
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
|| | ||| || || ||| | || | ||||| ||||| ||| || || || || |
Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTT-TGCTTTCACGTT 105772
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
|| | |||||| | ||| || || | ||||| |||||||| || | ||||| ||
Sbjct 105771 TTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCAC 105712
Query 33738 AAAGATCTGCAT 33749
|| ||||||||
Sbjct 105711 GAAAATCTGCAT 105700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328640319352320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |