Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2028 98.7 1e-14 >seq2028 Length=154558 Score = 98.7 bits (108), Expect = 1e-14 Identities = 316/482 (66%), Gaps = 14/482 (3%) Strand=Plus/Minus Query 1455798 GCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA--CACGGTCCACT 1455855 || || || ||||||||||| ||||||| || |||||| | || ||| |||| Sbjct 60599 GCTGAAGCTTCCTTTTGGACTACCGAGGAAGTGGACCTCACCCATGATCTACG--ACACT 60542 Query 1455856 GGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCC 1455915 ||| | |||| || || || |||||||| |||||| | | ||||||| || Sbjct 60541 GGGAGAAACTGAAATCTGAAGAACGACATTTCATTTCGCACGTGTTAG-CTTTTTTTGCT 60483 Query 1455916 GCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTG 1455975 ||| ||||| || || ||||| || | | || || | |||| || ||| || Sbjct 60482 GCCTCAGATGGTATTGTAAATGAGAATCTTGTGGAACGTTTCAGTCAAGAAGTTCAAGTG 60423 Query 1455976 CCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACC 1456035 | || || |||| ||||| || |||||||| || || ||||| ||||| ||||||| Sbjct 60422 ACTGAAGCTCGTTGTTTTTATGGATTCCAGATTGCAATTGAAAATATCCATTCTGAAATG 60363 Query 1456036 TACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095 ||| || || || || || ||| || || || || || | | ||| | Sbjct 60362 TACAGCAAACTTATTGAAACGTATATCAGCGATCCCAATGAAAAAGAGTTCTTGTTTAAC 60303 Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA-- 1456153 || || || || |||||| || | ||| || || || ||||| | |||||||| | Sbjct 60302 GCTATTGAAACCATGCCGTGTGTTAAGAAGAAAGCTGATTGGGCCCTAAAGTGGATTAGC 60243 Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCAT 1456212 | | | ||||| || | ||| | | || | ||||| | ||| || ||||| Sbjct 60242 TCGAAAACATCCTCG----TTCGGCGAAAGATTGGTGGCTTTTGCTGCCGTTGAAGGCAT 60187 Query 1456213 CTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 |||||| || || || ||| || || || ||| | ||||| || || || ||||||| Sbjct 60186 TTTTTTCAGTGGTAGCTT-TGCAGCGATTTTCTGGTTAAAGAAACGTGGTCTTATGCCCG 60128 Query 1456272 GT 1456273 || Sbjct 60127 GT 60126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176278001583152