Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq4409 132 5e-26
seq2259 131 2e-25
seq1411 104 2e-17
>seq4409
Length=33873
Score = 132 bits (146), Expect = 5e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| ||||| ||||| | ||| | |||| || |||||||||||||| || || |||
Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| || || |||||||| || || ||||| | |||||| || |||||
Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| ||||| || || ||||||||| || || || | ||||| |||| ||| ||
Sbjct 17863 ATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACC 17804
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|| ||||| ||||| || || ||||| || || |||||||| |||||| ||
Sbjct 17803 TCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATTGTG 17753
>seq2259
Length=79244
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| ||||| | || | || | ||| || ||||| |||||||| || || ||||||
Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAG 78121
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| || || || || ||||| || ||||| |||||||| || || || || ||
Sbjct 78122 AGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGG 78181
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| |||||||| || |||||||| || || || | |||||||| | ||| ||
Sbjct 78182 ATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACC 78241
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| ||||| || | |||||| ||||||||||||||
Sbjct 78242 TCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
>seq1411
Length=135556
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582
|| ||||| ||||||||||| | |||| | ||| || |||||||| || || ||
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642
|| | ||| || || || || || || ||||| || || ||||| ||| ||| ||
Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771
Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702
|| | |||||||| | ||| || || | || ||||||||||| || | ||||| |||
Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711
Query 134703 AAAATTTGCATT 134714
||||| ||||||
Sbjct 105710 AAAATCTGCATT 105699
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543
||||| || | || || | ||| | |||| ||||| |||||||| |||||||||||
Sbjct 108817 TTTCCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCA 108758
Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603
| || | || || || ||||| || || || ||||| | ||||||||| ||
Sbjct 108757 GAGAGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGA 108698
Query 134604 GGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || |||||||| |||||||||||
Sbjct 108697 GGAATTCCTTCTTTGTCTTGAATTTT 108672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505297977337920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |