Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2028 327 2e-84 seq820 190 3e-43 seq5960 84.2 3e-11 >seq2028 Length=154558 Score = 327 bits (362), Expect = 2e-84 Identities = 591/861 (69%), Gaps = 11/861 (1%) Strand=Plus/Plus Query 39347 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406 || || ||||| || ||||| ||||| || || | ||| || ||||||||||| Sbjct 59797 TTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATAAAGTCAAACGGATTC 59856 Query 39407 GTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCT 39466 |||||| ||| |||| || | |||||||| | ||| | ||| || ||||||||| Sbjct 59857 GTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGATCAGCTACAAATTCT 59916 Query 39467 ATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT 39526 || || ||||| || ||||||||||| || || | ||||| | |||||| | Sbjct 59917 ATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACTGGCAAAGCCTCAGAC 59976 Query 39527 AGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTC 39586 | ||||||| ||| || || || |||| || || |||||| || | Sbjct 59977 AAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTTACTCTTTCTTGTGAT 60036 Query 39587 GGTG---GATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCA 39643 ||| |||||| |||| || | |||||| || || ||||||||||| || ||| Sbjct 60037 GGTTTCTGATGCAG---ATGTGAGAATAGTAAGCATGCAAAATCACAATGTAGACCTTCA 60093 Query 39644 TCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGC 39703 ||||| || ||||| || |||||||| | || ||||| |||||||| || || | | Sbjct 60094 TCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGACCACGTTTCTTTAAC 60153 Query 39704 CAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACA 39763 || || || || ||||| ||| || || |||||||| || || ||||| || || Sbjct 60154 CAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACGGCAGCAAAAGCCACC 60213 Query 39764 AGTCTCTCTCCGTAACTTGTATCATTATGT----ATCCACTTCTGTGCCCAATCAGCTTT 39819 | ||| || ||| ||| | || || | |||||||| | |||||||||||||| Sbjct 60214 AATCTTTCGCCG-AACGAGGATGTTTTCGAGCTAATCCACTTTAGGGCCCAATCAGCTTT 60272 Query 39820 CTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATC 39879 |||||| ||||| ||||| ||||| ||||| ||||| | | | |||||||| ||| Sbjct 60273 CTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCTTTTTCATTGGGATC 60332 Query 39880 TTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCAT 39939 | | ||| || || || | || |||||||| |||||||| |||||||| || || Sbjct 60333 GCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATATTTTCAATTGCAAT 60392 Query 39940 CTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGC 39999 ||| ||||| |||||||| | |||||||| | ||| || ||| || || | |||| | Sbjct 60393 CTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTGACTGAAACGTTCCAC 60452 Query 40000 CAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAA 40059 | ||| ||||| || || ||||| || |||||||| || || || || ||| || Sbjct 60453 AAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAACACGTGCGAAATGAA 60512 Query 40060 ATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 40119 || | ||| || | | ||| ||| | ||||| | ||| | | | || ||||| Sbjct 60513 ATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATGGGTGAGGTCCACTTC 60572 Query 40120 TTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTG 40179 || | |||||||| || || || || | ||||| | | ||| ||||| | ||| Sbjct 60573 CTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCAAATATCTGGGAATTC 60632 Query 40180 TATTGGAAAAATAACAAATCT 40200 ||||| || | ||||||||| Sbjct 60633 AATTGGGAATAAAACAAATCT 60653 >seq820 Length=22770 Score = 190 bits (210), Expect = 3e-43 Identities = 293/415 (71%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 ||||||| |||| | ||| || | || ||| | |||||||||||| | ||| || || | Sbjct 20001 TTTTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGA 19942 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 |||| |||| |||||| || |||||||| | ||| ||||||| |||||| | ||| Sbjct 19941 AAGCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTT 19882 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 | ||||| |||| | |||||| || | |||||||| |||| ||||||| | ||| || Sbjct 19881 TAAGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTG 19822 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | | ||||||| || | || ||| ||||||||||| |||| || || | |||||| Sbjct 19821 CTCTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACA-- 19764 Query 69911 GTTTCAATGTGTCA----TATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || | || | || || || ||||| | ||||| || ||| | || | ||| Sbjct 19763 --TTGAGTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAA 19706 Query 69967 CAGCTAGACATTTGATGAT----GTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 || ||||| ||| || | || ||| | ||||||||||| |||||| || || Sbjct 19705 CAAGAAGACAATTG-TGGTCTTGGTGTAG---CTGCATTAAATAACGTAGGACTGGCATG 19650 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC 70077 ||||| |||||| || || |||||| ||||||||||| | || || ||| Sbjct 19649 CGTGAAATATTTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCC 19595 Score = 187 bits (206), Expect = 3e-42 Identities = 422/646 (65%), Gaps = 60/646 (9%) Strand=Plus/Minus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||| | || ||||| ||||| || |||||||||||| | || ||||||||| || Sbjct 22460 TTATCAACGGTGAACTGTATGGGATTGGCTGCGGGTTTTGTTCTTAAATAGTACATTCCA 22401 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||| ||||| |||| ||||| || ||||| || | ||| | || Sbjct 22400 GTTTTAAGACCCTTTTTCCAACCGTAAAAGTGCATTGAGCATAATACCCCATAGGTAGGT 22341 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 | || || ||||| || | |||| |||||||||| ||||| |||||||| |||||| Sbjct 22340 TTCGCGATGTGAATGTTTAAACTTTGAGTTTGATCGATAAAAGCGCCTCTATCCGCCGCC 22281 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCA 68604 || | ||| || |||||||||||||||||||| ||| || | || ||| | |||| Sbjct 22280 ATGTCTATGATTACCTTTTGAGGAATTTCCCAAACAGTTTTGTAGATTGTTTTTAAATCA 22221 Query 68605 TCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATC 68661 |||| | | | ||||| || || || | || || || |||| ||| || ||| Sbjct 22220 CTAGGAATTCCAGGTATGTTTTGGATTGACCCTCGATTGGCTAGAATTTGATTTTTCATC 22161 Query 68662 TCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATT---------- 68711 |||||| ||||||| ||| || ||||| || | || | || |||| Sbjct 22160 ACATCATCCCACAATCCTCTTTCAGTTAAGTCTTTTAGTAAGTGATGATTGACGATCTGA 22101 Query 68712 ---------------AACTATT------------------------------TGAAATTC 68726 ||||||| || ||||| Sbjct 22100 AAAATATTTTAATTGAACTATTCGCTATTTTGAAGGTACTATTATTTTAACCTGGAATTC 22041 Query 68727 CCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATT 68786 || || | |||||||||||||||||| ||||| || || ||||| | | ||||| || Sbjct 22040 GCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATACTCTCATTGTT 21981 Query 68787 TCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 68846 || | ||||||||||||||| || || |||||||| |||| | || ||||| | Sbjct 21980 GCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAGGAGTTTCTTAA 21921 Query 68847 ACCATGTGTTATGATTTTATCTTTTAGATGTTTCC-AATCCCAAAGATCAGATGGTACAA 68905 |||||| | ||||| |||| | ||| ||| ||||||| | ||| || ||| | Sbjct 21920 TCCATGTTTGGCAATTTTTACTTTCA-ATGCATCCCAATCCCATAAATCTGACGGTTTCA 21862 Query 68906 CATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCC 68951 | | ||| | |||||||||||||||||| | |||||| ||||| Sbjct 21861 CGTCCCACATATCGTATTGTAGAATTCCTTGGCTTGCAGGCGATCC 21816 Score = 154 bits (170), Expect = 2e-32 Identities = 240/339 (71%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 69103 CCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATA 69162 || |||| || |||||||||||||||||||||||||| ||| |||| |||||||| | | Sbjct 21554 CCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAGA 21495 Query 69163 GGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCC 69222 || ||||| || ||||| ||||| ||||| | |||| |||| |||| | | Sbjct 21494 GGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATATTT 21435 Query 69223 TTTAGTTTGAGAAAATCAAATC---GTCCATCT---ATAACAAACATATTCAGTGCTACA 69276 || ||||| ||||||||| | || |||| |||||||||| |||| | || Sbjct 21434 TTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTATT 21375 Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 || || |||||||| || || | || | | | |||| || || || | ||| Sbjct 21374 GAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAACAA 21315 Query 69337 AGATTACTACATTTGAT-AGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395 || ||||| | ||| || | |||| || || | |||||| ||| | || || ||||| Sbjct 21314 AGGTTACTGCCTTTTATCACTCCCAAG-TTCTTTTGATTAGATTTTCTATTGCAAGCGTC 21256 Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 |||||||| ||| | |||||||||||||| | ||||| Sbjct 21255 TTTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGAGA 21217 Score = 120 bits (132), Expect = 4e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTC 70149 ||||| || || | ||| | |||||| ||||||| ||| || |||| ||| ||||| Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467 Query 70150 AACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCG 70209 || | || || |||||||||||||||| |||||||||||||| ||||| ||||| || Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407 Query 70210 TAAATAATAACAGAATTTAGTTTATCCTTAT 70240 || |||||| ||||||||| ||||||| Sbjct 19406 TAGATAATATTGGAATTTAGTCGGTCCTTAT 19376 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 70336 CTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATA 70395 |||||| ||||||| ||||| || || | |||||| || || ||||| ||||| ||||| Sbjct 19222 CTAAATTGTTTTTTAGTTTCTTTATGCAGATTTGAGATTGCAATTCTAGCTGCAAGAATT 19163 Query 70396 GCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAAT 70455 ||||| |||||||| | | |||| |||| || |||| |||||||| || || | | Sbjct 19162 GCATAATCAGGATGGTCTATAGTCATCATAGCGGCAGTTTCTGCAGCTAAAGTGTCGAGT 19103 Query 70456 TCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 70498 || | ||||||||||| || || || || |||||||||| Sbjct 19102 TCGACTGTTGTAACTCCTGGGTAGAGACCCTGGATAACTTTCA 19060 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 69487 TTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 || ||||||||||| | | |||| | ||||||||| | | || | || |||| | Sbjct 21105 TTGTCTTTTTCATACTTTTCGTATAACGTTTCGAATTCTT-TACCATAGCA--ATCCGAA 21049 Query 69547 ---CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTC 69603 ||||| ||| || |||||||||| ||||| || |||| | |||||||||| Sbjct 21048 AGACCAGGGGATTGATGAGGACACATCAGCGACCATACTCCATCTGATTCAACTCGTTTC 20989 Query 69604 ATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTT 69663 || |||| ||| |||||||| || || ||| | |||||||| ||| |||||| || Sbjct 20988 ATGAATAAATCCGGAATCCATAGGGCATAAAATAAATCTCTGGCTCTCAATTCTTCTTTA 20929 Query 69664 CCT 69666 ||| Sbjct 20928 CCT 20926 >seq5960 Length=31561 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 163021 TTAGAAGGGTTGGTTTTAAAAGATATTAATGGAATATACGAGCCAGGAAAACGTAGATGG 163080 || ||||| | || || |||||| | | | | ||||||||| ||||||||| ||| Sbjct 11821 TTGGAAGGACTTGTATTGAAAGATGTGATGAGCAAATACGAGCCCGGAAAACGTCACTGG 11880 Query 163081 CTTAAAATAAAGAAAGACTACTTGAACAATGGTTCAATGGCAGACTCTGCAGATTTAGTA 163140 || ||| | || ||||| || || ||| ||||||||||| ||| ||||| | Sbjct 11881 CTAAAAGTCAAAAAAGATTATTTATTTGGGGGTGCAATGGCAGACAGTGCGGATTTGATT 11940 Query 163141 GTACTTGGGGCATATTATGGAAAAGGAATAAAGGGTGGAATGATGGCTGTCTTTTTGATG 163200 ||| | || || | || || | || ||| || || |||||| |||| || || ||| Sbjct 11941 GTATTGGGAGCCTGGTACGGCACTGGCCAAAAAGGCGGTATGATGTCTGTTTTCTTAATG 12000 Query 163201 GGTTGCTATGATGA 163214 || |||||| |||| Sbjct 12001 GGCTGCTATAATGA 12014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686772311221440