Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 300 1e-76
seq6696 95.1 1e-14
>seq2028
Length=154558
Score = 300 bits (332), Expect = 1e-76
Identities = 619/907 (68%), Gaps = 18/907 (2%)
Strand=Plus/Minus
Query 43675 TTTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATG 43734
||| || | |||||| || || ||||| | || |||||| ||| | || || ||
Sbjct 60675 TTTACTGAAAGAAAACCCTCGAAGATTTGTTTTATTCCCAATTGAATTCCCAGATATTTG 60616
Query 43735 GCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794
||| | ||||| |||| | || || |||||||| | || ||||| || | || |
Sbjct 60615 GCAGAAATACAAGGAAGCTGAAGCTTCCTTTTGGACTACCGAGGAAGTGGACCTCACCCA 60556
Query 43795 AGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854
|| || ||| ||| | | ||| | ||||| |||||| || || || ||
Sbjct 60555 TGATCTACGACACTGGGAGAAACTGAAATCTGAAGAACGACATTTCATTTCGCACGTGTT 60496
Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914
|| ||||||||||| || || || || ||||| ||| | || || || ||
Sbjct 60495 AGCTTTTTTTGCTGCCTCAGATGGTATTGTAAATGAGAATCTTGTGGAACGTTTCAGTCA 60436
Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974
|||||||||| | | ||||| || ||||||||||| || || ||||| || ||||||||
Sbjct 60435 AGAAGTTCAAGTGACTGAAGCTCGTTGTTTTTATGGATTCCAGATTGCAATTGAAAATAT 60376
Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034
||||| ||||||||||| || || || ||||| |||| ||| | || || |
Sbjct 60375 CCATTCTGAAATGTACAGCAAACTTATTGAAACGTATATCAGCGATCCCAATGAAAAAGA 60316
Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCC 44093
|||||||| || || ||||| | || || | |||| | ||||| || |||||||
Sbjct 60315 GTTCTTGTTTAACGCTATTGAAACCATGCCGTGTG-TTAAGAAGAAAGCTGATTGGGCCC 60257
Query 44094 TTAAATGGATAAATTC-AAATGATTCT--TTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150
| || ||||| | || ||| || || || || ||| || | || || ||||| | |
Sbjct 60256 TAAAGTGGATTAGCTCGAAAACATCCTCGTTCGGCGAAAGATTGGTGGCTTTTGCTGCCG 60197
Query 44151 TGGAAGGCATTTTCTTTTCAG-GATCG-TTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208
| ||||||||||| |||||| | | | ||||| || || || |||||||||||||| ||
Sbjct 60196 TTGAAGGCATTTT--TTTCAGTGGTAGCTTTGCAGCGATTTTCTGGTTAAAGAAACGTGG 60139
Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268
| | ||||| || || || ||||||||||| || ||| | |||||||| |||||||
Sbjct 60138 TCTTATGCCCGGTTTAACATTTTCAAATGAATTGATATCCAGAGATGAAGGTCTACATTG 60079
Query 44269 CGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACA-A 44327
|||||||| ||||| || | | |||| | | || || ||| |||| | |
Sbjct 60078 TGATTTTGCATGCTTACTATTCTCACATCT---GCATCAGAAACCATCA--CAAGAAAGA 60024
Query 44328 TTA--CAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385
|| ||| |||| ||| ||| ||||| | ||||||||||| || || | || ||
Sbjct 60023 GTAACCAG-TATTATTGCAGATGCAGTTACAATAGAACAAGAGTTCTTGTCTGAGGCTTT 59965
Query 44386 ACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGC 44445
|| || | | | || ||||||||| |||||| || ||||| |||| | ||
Sbjct 59964 GCCAGTCAGTCTGATTGGAATGAATTGCAAATTGATGTGTCAGTATATAGAATTTGTAGC 59905
Query 44446 AGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGA 44505
|||||||| | ||| | || ||| | ||| |||| || | || ||||||||
Sbjct 59904 TGATCGTTTGTTAAGTGAATTAGGCTGCAAGAAAATCTATGGTGCAACGAATCCGTTTGA 59845
Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGA 44565
|||||| | ||||| ||||| |||||||||||||||||||| || || ||
Sbjct 59844 CTTTATGACGATCATTTCTACAGAAGGTAAAACAAACTTTTTTGAAAAGAAAGTGGGCGA 59785
Query 44566 ATATCAG 44572
|||| ||
Sbjct 59784 ATATAAG 59778
>seq6696
Length=61718
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/149 (74%), Gaps = 6/149 (4%)
Strand=Plus/Plus
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT---GGT 19605
|| ||||| ||||| | |||||| | || || || ||||| |||||||||||| | |
Sbjct 3092 TTACACATAATAATCTTTGATGAAATCGATGCCATTTGTAAACAAAGAGGTTCTGTAGCT 3151
Query 19606 GTAAA---TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
| ||| ||| || |||||||| || |||||||| | || || ||| | || || |||
Sbjct 3152 GGAAATACTGGTGTCCATGACACAGTAGTCAATCAGTTACTTTCGAAAATTGATGGAGTT 3211
Query 19663 AACCAACTGAATAATATTTTAGTTATTGG 19691
| || || |||||||| ||||| |||||
Sbjct 3212 GAACAGCTCAATAATATATTAGTAATTGG 3240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397378999855480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |