Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2028 300 1e-76 seq6696 95.1 1e-14 >seq2028 Length=154558 Score = 300 bits (332), Expect = 1e-76 Identities = 619/907 (68%), Gaps = 18/907 (2%) Strand=Plus/Minus Query 43675 TTTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATG 43734 ||| || | |||||| || || ||||| | || |||||| ||| | || || || Sbjct 60675 TTTACTGAAAGAAAACCCTCGAAGATTTGTTTTATTCCCAATTGAATTCCCAGATATTTG 60616 Query 43735 GCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 ||| | ||||| |||| | || || |||||||| | || ||||| || | || | Sbjct 60615 GCAGAAATACAAGGAAGCTGAAGCTTCCTTTTGGACTACCGAGGAAGTGGACCTCACCCA 60556 Query 43795 AGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || || ||| ||| | | ||| | ||||| |||||| || || || || Sbjct 60555 TGATCTACGACACTGGGAGAAACTGAAATCTGAAGAACGACATTTCATTTCGCACGTGTT 60496 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || ||||||||||| || || || || ||||| ||| | || || || || Sbjct 60495 AGCTTTTTTTGCTGCCTCAGATGGTATTGTAAATGAGAATCTTGTGGAACGTTTCAGTCA 60436 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 |||||||||| | | ||||| || ||||||||||| || || ||||| || |||||||| Sbjct 60435 AGAAGTTCAAGTGACTGAAGCTCGTTGTTTTTATGGATTCCAGATTGCAATTGAAAATAT 60376 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| ||||||||||| || || || ||||| |||| ||| | || || | Sbjct 60375 CCATTCTGAAATGTACAGCAAACTTATTGAAACGTATATCAGCGATCCCAATGAAAAAGA 60316 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCC 44093 |||||||| || || ||||| | || || | |||| | ||||| || ||||||| Sbjct 60315 GTTCTTGTTTAACGCTATTGAAACCATGCCGTGTG-TTAAGAAGAAAGCTGATTGGGCCC 60257 Query 44094 TTAAATGGATAAATTC-AAATGATTCT--TTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | || ||||| | || ||| || || || || ||| || | || || ||||| | | Sbjct 60256 TAAAGTGGATTAGCTCGAAAACATCCTCGTTCGGCGAAAGATTGGTGGCTTTTGCTGCCG 60197 Query 44151 TGGAAGGCATTTTCTTTTCAG-GATCG-TTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 | ||||||||||| |||||| | | | ||||| || || || |||||||||||||| || Sbjct 60196 TTGAAGGCATTTT--TTTCAGTGGTAGCTTTGCAGCGATTTTCTGGTTAAAGAAACGTGG 60139 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 | | ||||| || || || ||||||||||| || ||| | |||||||| ||||||| Sbjct 60138 TCTTATGCCCGGTTTAACATTTTCAAATGAATTGATATCCAGAGATGAAGGTCTACATTG 60079 Query 44269 CGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACA-A 44327 |||||||| ||||| || | | |||| | | || || ||| |||| | | Sbjct 60078 TGATTTTGCATGCTTACTATTCTCACATCT---GCATCAGAAACCATCA--CAAGAAAGA 60024 Query 44328 TTA--CAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 || ||| |||| ||| ||| ||||| | ||||||||||| || || | || || Sbjct 60023 GTAACCAG-TATTATTGCAGATGCAGTTACAATAGAACAAGAGTTCTTGTCTGAGGCTTT 59965 Query 44386 ACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGC 44445 || || | | | || ||||||||| |||||| || ||||| |||| | || Sbjct 59964 GCCAGTCAGTCTGATTGGAATGAATTGCAAATTGATGTGTCAGTATATAGAATTTGTAGC 59905 Query 44446 AGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGA 44505 |||||||| | ||| | || ||| | ||| |||| || | || |||||||| Sbjct 59904 TGATCGTTTGTTAAGTGAATTAGGCTGCAAGAAAATCTATGGTGCAACGAATCCGTTTGA 59845 Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGA 44565 |||||| | ||||| ||||| |||||||||||||||||||| || || || Sbjct 59844 CTTTATGACGATCATTTCTACAGAAGGTAAAACAAACTTTTTTGAAAAGAAAGTGGGCGA 59785 Query 44566 ATATCAG 44572 |||| || Sbjct 59784 ATATAAG 59778 >seq6696 Length=61718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/149 (74%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT---GGT 19605 || ||||| ||||| | |||||| | || || || ||||| |||||||||||| | | Sbjct 3092 TTACACATAATAATCTTTGATGAAATCGATGCCATTTGTAAACAAAGAGGTTCTGTAGCT 3151 Query 19606 GTAAA---TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| ||| || |||||||| || |||||||| | || || ||| | || || ||| Sbjct 3152 GGAAATACTGGTGTCCATGACACAGTAGTCAATCAGTTACTTTCGAAAATTGATGGAGTT 3211 Query 19663 AACCAACTGAATAATATTTTAGTTATTGG 19691 | || || |||||||| ||||| ||||| Sbjct 3212 GAACAGCTCAATAATATATTAGTAATTGG 3240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397378999855480