Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1411 111 1e-19 seq4409 84.2 2e-11 seq820 82.4 6e-11 >seq1411 Length=135556 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 |||||||| || |||||||| | | |||| ||||||| ||||||||||| ||| | Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 |||||||| ||||| || || || | || || || || ||||| ||||| | || Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | |||||| | | ||||||||| | || || | ||| || || || |||||||| Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 27237 AAGATTTGCAT 27247 || || ||||| Sbjct 105710 AAAATCTGCAT 105700 >seq4409 Length=33873 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||||||||| ||||| || ||||||||||| || ||| || | || ||||||| Sbjct 17965 ACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCC 17906 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| |||||| | || | | ||| || || ||||| | || || || || Sbjct 17905 AGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGA 17846 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || || | |||| | |||||| | | ||| || || ||||| || | ||| Sbjct 17845 ATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTG 17786 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| | || || || || || ||||| Sbjct 17785 CCCGTTAAGGTCTTTACGAAAATCTGCAT 17757 >seq820 Length=22770 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 131042 CTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCT 131101 ||||| ||||| || |||||||||| |||||| |||||||||||| || | | ||| Sbjct 21719 CTAGCCTCCAATGCGCCGTAATAAAGGGTTTCAAAAATTTGTTTATTCAAATCTGCAGCT 21660 Query 131102 TGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACC 131151 | | || || |||| | | |||||||||||||||| || || ||||| Sbjct 21659 TCAGTACTGTCAAAAGGCATTCTCATTAAAATAAAAGCATCAGCCAGACC 21610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424852076396352