Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1411 111 1e-19
seq4409 84.2 2e-11
seq820 82.4 6e-11
>seq1411
Length=135556
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116
|||||||| || |||||||| | | |||| ||||||| ||||||||||| ||| |
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176
|||||||| ||||| || || || | || || || || ||||| ||||| | ||
Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771
Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236
|| | |||||| | | ||||||||| | || || | ||| || || || ||||||||
Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711
Query 27237 AAGATTTGCAT 27247
|| || |||||
Sbjct 105710 AAAATCTGCAT 105700
>seq4409
Length=33873
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||||||||| ||||| || ||||||||||| || ||| || | || |||||||
Sbjct 17965 ACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCC 17906
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| ||||| |||||| | || | | ||| || || ||||| | || || || ||
Sbjct 17905 AGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGA 17846
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|| || || | |||| | |||||| | | ||| || || ||||| || | |||
Sbjct 17845 ATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTG 17786
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||||| | || || || || || |||||
Sbjct 17785 CCCGTTAAGGTCTTTACGAAAATCTGCAT 17757
>seq820
Length=22770
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 131042 CTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCT 131101
||||| ||||| || |||||||||| |||||| |||||||||||| || | | |||
Sbjct 21719 CTAGCCTCCAATGCGCCGTAATAAAGGGTTTCAAAAATTTGTTTATTCAAATCTGCAGCT 21660
Query 131102 TGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACC 131151
| | || || |||| | | |||||||||||||||| || || |||||
Sbjct 21659 TCAGTACTGTCAAAAGGCATTCTCATTAAAATAAAAGCATCAGCCAGACC 21610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424852076396352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |