Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq820 82.4 9e-11 >seq820 Length=22770 Score = 82.4 bits (90), Expect = 9e-11 Identities = 231/351 (66%), Gaps = 3/351 (1%) Strand=Plus/Minus Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 |||| |||||| | | |||||||| | || | || || || | ||||||| |||| Sbjct 21574 AAAAAAAATACCTAT-CAAGACCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTG 21516 Query 118575 GACTTCCGAGCGGTCTCCACG-GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 118633 || || || ||| | || ||| | || ||||||||| | |||| | ||| | Sbjct 21515 GAATTTTCTGCT-TCTGGTAGAGGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCT 21457 Query 118634 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 118693 || || | || ||||| | | || ||||| |||||||||| | ||| |||| Sbjct 21456 AGTCACTATTTTAGTGATATTTTTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATT 21397 Query 118694 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 118753 ||| || | | | ||||| ||||||||||| |||| | || || || Sbjct 21396 AACAAACATGTTCACAGGTATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGT 21337 Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 ||| |||| ||||| | || | ||| | || || ||||||||||||||||| Sbjct 21336 GTATTCTACGATTTCAGAACAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATT 21277 Query 118814 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 || ||| | || || || || ||||||||||| || || || || || || Sbjct 21276 AGATTTTCTATTGCAAGCGTCTTTGTAAAGCATATAAGGAGTACCAGTTTC 21226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618312316925760