Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq820 120 4e-22 >seq820 Length=22770 Score = 120 bits (132), Expect = 4e-22 Identities = 201/291 (69%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 104893 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTG 104952 ||| ||| | | |||||| || |||||||| || || ||||||||||||||||| || Sbjct 21204 AGCCATTGTAACTTCTCAAGTAGAAACTGGTACTCCTTATATGCTTTACAAAGACGCTTG 21263 Query 104953 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGA 105012 || ||| |||||||||||| ||||| ||||| || | || || ||| | || Sbjct 21264 CAATAGAAAATCTAATCAAAAGAACTTGGGAGTGATAAAAGGCAGTAACCTTTGTTCTGA 21323 Query 105013 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072 |||| | |||| || || || | ||||| ||||| || || ||||| || | Sbjct 21324 AATCGTAGAATACACGTCGCCCGACGAAATTGCTGTCTGTAATCTGGCTTCAATACCTGT 21383 Query 105073 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 105132 || || ||| || |||| | ||||| ||||||| |||||||||| | | | || Sbjct 21384 GAACATGTTTGTTAATGCAGATAGAAAGAGTTTTGATTTTGAAAAACTCAAAAATATCAC 21443 Query 105133 GAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC 105183 |||| || || | |||| | || | |||| |||| ||| | |||||| Sbjct 21444 TAAAATAGTGACTAGAAACTTGAATAAGATTATCGATATAAACTATTACCC 21494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583144906079040