Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2259 168 8e-37 seq4409 132 5e-26 seq1411 123 3e-23 seq820 84.2 2e-11 >seq2259 Length=79244 Score = 168 bits (186), Expect = 8e-37 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || || || || ||||| || || |||||||| || || Sbjct 78288 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATCC 78229 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| |||||||||||||| || || || || |||||||| Sbjct 78228 GACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCAA 78169 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||||||||| ||||| ||||||| ||| ||||| | ||||||||| Sbjct 78168 CAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAAT 78109 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||||||||| ||||| || || Sbjct 78108 ATCCAAAAGGAGTCCACCCTGCA 78086 >seq4409 Length=33873 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| | || |||||||| || ||||||||||| || | Sbjct 17756 AATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTC 17815 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | ||||| ||||||||||||||||| |||||||| |||||||| Sbjct 17816 GGACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCA 17875 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || || || || || ||||| || || | || || | | || ||||| Sbjct 17876 GCAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAA 17935 Query 27585 TGTCCAAAAGGAATCCAC 27602 | | ||||||||||| || Sbjct 17936 TATTCAAAAGGAATCTAC 17953 >seq1411 Length=135556 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || |||||||| ||||| || |||||||||||||| ||| Sbjct 108648 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 108707 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| || ||||| || |||| ||||| || | ||||| || Sbjct 108708 CAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACAAC 108767 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| ||||| | ||| | || | |||||||| |||||| Sbjct 108768 ATCCAAAAGGAGTCCACCTTACATTTGGTGCTCCGTCTTCGTGGTGGA 108815 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| || || || || || ||||| || || || || || | || ||||| | Sbjct 105696 TAGAATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACATTGGAAGTTGAACC 105755 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || | || | ||| |||| || || |||||||||||||| || || || ||||| Sbjct 105756 TTCCGACACTATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGGATCCCCCCAGA 105815 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||| || ||||| || || |||||||| || || || || | || |||||| ||||||| Sbjct 105816 CCAACAACGTCTCATCTTCGCTGGTAAACAGCTTGAAGACGGCCGCACCCTATCAGACTA 105875 Query 27582 TAATGTCCAAAAGGA 27596 || | ||||| || Sbjct 105876 CAACATACAAAAAGA 105890 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 27417 TGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGC 27476 ||| || || || || |||||||| |||||||| || || || | || | |||| Sbjct 106341 TGTGAAAACCCTAACTGGCAAGACCATTACTCTAGAAGTGGAACCTTCCGACACTATTGA 106400 Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | || || || |||||||| ||||| || ||||||||||||||||| | | || Sbjct 106401 AAATGTAAAAGCCAAGATTCAGGATAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGAT 106460 Query 27537 TTTTGCTGGTAA 27548 |||||| || || Sbjct 106461 TTTTGCCGGAAA 106472 >seq820 Length=22770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 80046 ATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTT 80105 ||||||||| || || || || ||||| ||||| ||||| | |||||| || | | Sbjct 22413 ATAGTACATTCCAGTTTTAAGACCCTTTTTCCAACCGTAAAAGTGCATTGAGCATAATAC 22354 Query 80106 CGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCC 80165 | || || || ||| | ||| ||||| | | |||| ||| ||| ||||| || Sbjct 22353 CCCATAGGTAGGTTTCGCGATGTGAATGTTTAAACTTTGAGTTTGATCGATAAAAGCGCC 22294 Query 80166 ACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 | ||| |||||||| || || ||| |||||| ||||||||||| || || Sbjct 22293 TCTATCCGCCGCCATGTCTATGATTACCTTTTGAGGAATTTCCCAAACAGT 22243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570197079323520