Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4409 114 8e-21 seq1411 105 4e-18 seq2259 93.3 3e-14 >seq4409 Length=33873 Score = 114 bits (126), Expect = 8e-21 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| ||||| || || | ||||||||| | || ||||||||||| |||||||| | Sbjct 17985 CGCCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGG 17926 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || ||||||| |||||||| ||||| || || || | ||| ||||| |||| Sbjct 17925 ACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCG 17866 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGT-CTTCGCTCTC 34655 | | ||| |||||||| ||| ||||| |||| | ||| |||| | || | || Sbjct 17865 GAATTCCTTCCTTGTC-CTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGT-TC 17808 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || || ||||| || || || ||||||||||| Sbjct 17807 GACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757 >seq1411 Length=135556 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||| ||||| || ||||| || || || |||||||||| |||||||| || || Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | ||| |||||||| || || | || |||||||| |||||| | ||| ||| | Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTT-GCTTTCACGTT 105772 Query 34636 AAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || ||||| || ||||||| || || |||||||| || | |||||||| Sbjct 105771 TTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCAC 105712 Query 34695 AAAAATCTGCAT 34706 ||||||||||| Sbjct 105711 GAAAATCTGCAT 105700 Score = 87.8 bits (96), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||| | ||| ||||||||| ||||| || || || Sbjct 108814 CCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 108755 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||||||||| || || || || || | ||| || || || || Sbjct 108754 AGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 108695 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC 34632 | ||| || |||||| ||| ||| | ||| || Sbjct 108694 ATTCCTTCTTTGTCT-TGAATTTTGGCTTTTAC 108663 >seq2259 Length=79244 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || ||| ||||||||| || ||||| || || || || || | || || Sbjct 78080 ACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAGAGGGTGCGACCATCCTCC 78139 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||||||||| ||||| || ||||| |||||||| || || | || || ||||| || Sbjct 78140 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTTGTC-CTG 78198 Query 34618 ATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| | |||| | ||| ||||| || || || | ||| || || || Sbjct 78199 AATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGATGGTCTT 78258 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || | |||||||| ||||| ||||| Sbjct 78259 ACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314668626647768