Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq4409 114 8e-21
seq1411 105 4e-18
seq2259 93.3 3e-14
>seq4409
Length=33873
Score = 114 bits (126), Expect = 8e-21
Identities = 167/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| ||||| || || | ||||||||| | || ||||||||||| |||||||| |
Sbjct 17985 CGCCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGG 17926
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| | || || ||||||| |||||||| ||||| || || || | ||| ||||| ||||
Sbjct 17925 ACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCG 17866
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGT-CTTCGCTCTC 34655
| | ||| |||||||| ||| ||||| |||| | ||| |||| | || | ||
Sbjct 17865 GAATTCCTTCCTTGTC-CTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGT-TC 17808
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | || || || || || ||||| || || || |||||||||||
Sbjct 17807 GACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757
>seq1411
Length=135556
Score = 105 bits (116), Expect = 4e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575
|| ||||| ||||| || ||||| || || || |||||||||| |||||||| || ||
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635
|| | ||| |||||||| || || | || |||||||| |||||| | ||| ||| |
Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTT-GCTTTCACGTT 105772
Query 34636 AAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694
|| ||||| || ||||||| || || |||||||| || | ||||||||
Sbjct 105771 TTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCAC 105712
Query 34695 AAAAATCTGCAT 34706
|||||||||||
Sbjct 105711 GAAAATCTGCAT 105700
Score = 87.8 bits (96), Expect = 1e-12
Identities = 112/153 (73%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | ||||||||| | ||| ||||||||| ||||| || || ||
Sbjct 108814 CCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 108755
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | |||||||||||||| || || || || || | ||| || || || ||
Sbjct 108754 AGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 108695
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC 34632
| ||| || |||||| ||| ||| | ||| ||
Sbjct 108694 ATTCCTTCTTTGTCT-TGAATTTTGGCTTTTAC 108663
>seq2259
Length=79244
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| || || ||| ||||||||| || ||||| || || || || || | || ||
Sbjct 78080 ACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAGAGGGTGCGACCATCCTCC 78139
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||||||||| ||||| || ||||| |||||||| || || | || || ||||| ||
Sbjct 78140 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTTGTC-CTG 78198
Query 34618 ATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
| ||| | |||| | ||| ||||| || || || | ||| || || ||
Sbjct 78199 AATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGATGGTCTT 78258
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| || | |||||||| ||||| |||||
Sbjct 78259 ACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314668626647768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |