Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4409 168 6e-37 seq2259 136 3e-27 seq1411 113 4e-20 seq4438 96.9 3e-15 >seq4409 Length=33873 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || | || |||||| | || |||||||| || |||||||| Sbjct 17757 ATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 17816 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||||||| ||||| ||||| || || || || || Sbjct 17817 GACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCAG 17876 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||||| |||||||| | ||| | |||||||| || Sbjct 17877 CAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAAT 17936 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||||||||| || |||||||||||||| | || || | |||||| Sbjct 17937 ATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGGC 17984 >seq2259 Length=79244 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || ||| | || || ||||| || ||||| ||| Sbjct 78288 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATCC 78229 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| ||||||||||| || || || || ||| Sbjct 78228 GACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCAA 78169 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||| |||| || || ||| | ||||| || || Sbjct 78168 CAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAAT 78109 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| | | ||| | ||||| || Sbjct 78108 ATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGGTAT 78059 >seq1411 Length=135556 Score = 113 bits (124), Expect = 4e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||||| | ||||| | || ||| |||||||||||||||||||| || || || ||| Sbjct 108645 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGAT 108704 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||| | || || | ||| || |||||| | ||||| | || | || || ||| Sbjct 108705 CAGCAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTAC 108764 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||||||||| |||||||||||||| | ||| | || ||||| Sbjct 108765 AACATCCAAAAGGAGTCCACCTTACATTTGGTGCTCCGTCTTCGTGGTGG 108814 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 |||||| |||||||| | ||| || |||||||||||||| || ||| |||| || || Sbjct 108224 TCAACAACGTTTAATCTTCGCTGGAAAACAATTGGAAGATGGTCGTACCCTTTCAGACTA 108283 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||| || || ||| | || |||||||| | ||| | || ||||| Sbjct 108284 CAATATTCAAAAAGAATCCACCCTCCACTTGGTTTTAAGATTGAGAGGAGGCAT 108337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 26993 GATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTC 27052 ||| || |||||||| ||||| |||||| | ||||| | ||||| ||||| || ||| | Sbjct 107896 GATTTTCGTAAAAACCCTGACTGGCAAGACAATTACATTAGAAGTAGAACCCTCAGACAC 107955 Query 27053 GATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 ||||| | || ||| |||||||||||||||||||| || || || Sbjct 107956 CATTGAAAACGTAAAAGCTAAAATTCAAGACAAAGAAGGAATTCCCCC 108003 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 27083 CAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||| ||||| || || || || |||||| | || || | ||||| |||||||| ||||| Sbjct 108457 CAAGGAAGGTATTCCTCCAGACCAACAGAGATTGATTTTTGCCGGAAAACAATTAGAAGA 108516 Query 27143 CAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 | ||| |||| || ||||||||||| |||||||| || || || |||||| || Sbjct 108517 TGGACGTACCCTTTCTGACTACAACATTCAGAAGGAGTCAACATTGCACTTGGTTCTG 108574 >seq4438 Length=69644 Score = 96.9 bits (106), Expect = 3e-15 Identities = 284/435 (65%), Gaps = 2/435 (0%) Strand=Plus/Plus Query 135294 TTGAAGAGTGTCTAGTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATT 135353 |||||||| |||| || | |||||||| || || | |||| || || || ||| Sbjct 6617 TTGAAGAGCTCATAGTACGTAGAGAATTGGCAGATAACTATTGTCTCTACAATAATAATT 6676 Query 135354 ATGATTGCATAGAAGGTGCTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTG 135413 | || |||| |||| || | | |||||| ||| |||| || | || ||| || || Sbjct 6677 ACGACAACATAAAAGGCGCCGCAGAATGGGCTCAAAAAACATTACTCGATCATGCAATTG 6736 Query 135414 ATCGCAGAGACTTTTGTTACACGCG-CGAGCAATGGGACCAAGCGTTGACGCATGACCCG 135472 | || | | ||| || | |||| ||| || || ||| || ||| Sbjct 6737 ACAAAAGGAATTACATTTATTCGAGACGAG-AATTTGAGATGGCTAAGACACACGACTTA 6795 Query 135473 TTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGC 135532 | ||||| ||||| ||| ||||| ||||| ||||| || || | ||||| Sbjct 6796 ATTTGGAATGCGGCTCAAAAACAGCTCCGTGTCGAAGGTAAAATACATGGGTACATGCGT 6855 Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACAC 135592 ||||| ||| ||||| || |||||||| | | | || | | || || || Sbjct 6856 ATGTACTGGTGTAAAAAAATTCTGGAATGGACGGAAAGTCCAGACAAAGCTTTAGAAATT 6915 Query 135593 GCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 ||| | | | |||||| ||| ||| |||||| |||| | || || | || || Sbjct 6916 GCATTGTGGCTAAATGATGTATACGCTTTGGATGGAAACGATCCGAACGGATTTGTTGGA 6975 Query 135653 TGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGC 135712 |||||||| ||||| ||||| ||||||||||| ||||| ||||| ||| | ||||| Sbjct 6976 GTGATGTGGTCGATTTGTGGTGTCCACGATCAAGGTTGGAAAGAGCGAAAAATTTTTGGA 7035 Query 135713 AAGATTCGCTATATG 135727 || || || |||||| Sbjct 7036 AAAATACGTTATATG 7050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434831981713920