Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1411 150 4e-31 seq4409 145 2e-29 seq2259 141 2e-28 >seq1411 Length=135556 Score = 150 bits (166), Expect = 4e-31 Identities = 151/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 |||||||| ||||| || || | ||||| | || ||||| ||||| || || |||||| Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || || ||||||||||| || || | |||||||||||||| |||||| |||||||||| Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 ||||| ||||| || |||||| || | ||||| || || || || || || || || Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 211104 AACACCTGCATTTTAT 211119 || | ||||||| ||| Sbjct 105710 AAAATCTGCATTCTAT 105695 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 |||||||| ||||||||||| || || | || || | ||||||||| || || || || Sbjct 108784 GTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCTTCAAGTTGTTTTCCA 108725 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | | || || || ||||||| |||||| ||||| || || || ||| Sbjct 108724 GCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATTTTGGCTTTT 108665 Query 211038 ACGTTTTCGATGGTGTCAGA 211057 || ||||| || || || || Sbjct 108664 ACATTTTCAATAGTATCGGA 108645 >seq4409 Length=33873 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || ||||| || |||||||| | | |||| ||| |||||||| || ||||| Sbjct 17953 GTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCG 17894 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | | || ||||| || |||| ||||||||||||||| || ||| || Sbjct 17893 GCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGAATTTTTGCCTTT 17834 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || ||||| || ||| ||||| |||||||| ||||| ||||| | ||| Sbjct 17833 ACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTC 17774 Query 211098 TTTACAAACACCTGCATT 211115 ||||| || | ||||||| Sbjct 17773 TTTACGAAAATCTGCATT 17756 >seq2259 Length=79244 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||| || |||||||| |||||||| ||||| || | ||||| | || Sbjct 78073 TCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAGAGGGTGCGACC 78132 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| ||||| || || || || ||||| | ||||||||||| || || | ||||| || Sbjct 78133 ATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTT 78192 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| || || || || ||||| |||||||| || ||| ||||| || ||||| Sbjct 78193 GTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGAT 78252 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || |||||||| || || || | ||||| Sbjct 78253 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158915918410040