Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4409 163 2e-35 seq2259 131 1e-25 seq1411 131 1e-25 >seq4409 Length=33873 Score = 163 bits (180), Expect = 2e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||| | ||||| || || |||||||| || || || | | Sbjct 17756 AATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTC 17815 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||| |||||| |||| ||||||| ||||| ||||| | |||||||| || Sbjct 17816 GGACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCA 17875 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || |||||||||||||||||||||| ||| ||||| |||||| || Sbjct 17876 GCAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAA 17935 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || || || |||||||| || Sbjct 17936 TATTCAAAAGGAATCTACCTTACATTTGGT 17965 >seq2259 Length=79244 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| ||||| || || || ||||| || || || || | | Sbjct 78288 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATCC 78229 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| |||||| |||||||||||| | || ||||| ||| Sbjct 78228 GACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCAA 78169 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || ||||||||||| || | ||||| | ||| || || Sbjct 78168 CAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAAT 78109 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| |||||||| | || || || | || ||| |||| || Sbjct 78108 ATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGG 78062 >seq1411 Length=135556 Score = 131 bits (144), Expect = 1e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || ||||||||||||||| |||||||| || || ||||| ||||| | |||||||| | Sbjct 105696 TAGAATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACATTGGAAGTTGAACC 105755 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| | |||| | ||| ||| ||| ||||| ||||| | || ||||| Sbjct 105756 TTCCGACACTATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGGATCCCCCCAGA 105815 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| ||| | || || || || ||||| || ||||||| ||||| || || || Sbjct 105816 CCAACAACGTCTCATCTTCGCTGGTAAACAGCTTGAAGACGGCCGCACCCTATCAGACTA 105875 Query 23787 CAACATACAAAAAGA 23801 ||||||||||||||| Sbjct 105876 CAACATACAAAAAGA 105890 Score = 102 bits (112), Expect = 6e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| ||||| |||||| ||||||||||| | || |||||||| Sbjct 108648 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 108707 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || |||||||| ||||| | ||| ||| | || |||||| Sbjct 108708 CAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACAAC 108767 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| |||||||| |||||||| || Sbjct 108768 ATCCAAAAGGAGTCCACCTTACATTTGGT 108796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337944116555168