Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq4409 163 2e-35
seq2259 131 1e-25
seq1411 131 1e-25
>seq4409
Length=33873
Score = 163 bits (180), Expect = 2e-35
Identities = 162/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || ||| | ||||| || || |||||||| || || || | |
Sbjct 17756 AATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTC 17815
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||||| |||||| |||| ||||||| ||||| ||||| | |||||||| ||
Sbjct 17816 GGACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCA 17875
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || || |||||||||||||||||||||| ||| ||||| |||||| ||
Sbjct 17876 GCAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAA 17935
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
|| ||||| || || || |||||||| ||
Sbjct 17936 TATTCAAAAGGAATCTACCTTACATTTGGT 17965
>seq2259
Length=79244
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| ||||| ||||| || || || ||||| || || || || | |
Sbjct 78288 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATCC 78229
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| |||| |||||| |||||||||||| | || ||||| |||
Sbjct 78228 GACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCAA 78169
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||||| || ||||| || ||||||||||| || | ||||| | ||| || ||
Sbjct 78168 CAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAAT 78109
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||| |||||||| | || || || | || ||| |||| ||
Sbjct 78108 ATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGG 78062
>seq1411
Length=135556
Score = 131 bits (144), Expect = 1e-25
Identities = 146/195 (75%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666
|| ||||||||||||||| |||||||| || || ||||| ||||| | |||||||| |
Sbjct 105696 TAGAATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACATTGGAAGTTGAACC 105755
Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| |||||| | |||| | ||| ||| ||| ||||| ||||| | || |||||
Sbjct 105756 TTCCGACACTATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGGATCCCCCCAGA 105815
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||||| ||| | || || || || ||||| || ||||||| ||||| || || ||
Sbjct 105816 CCAACAACGTCTCATCTTCGCTGGTAAACAGCTTGAAGACGGCCGCACCCTATCAGACTA 105875
Query 23787 CAACATACAAAAAGA 23801
|||||||||||||||
Sbjct 105876 CAACATACAAAAAGA 105890
Score = 102 bits (112), Expect = 6e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||||| ||||| |||||| ||||||||||| | || ||||||||
Sbjct 108648 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 108707
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || || || || |||||||| ||||| | ||| ||| | || ||||||
Sbjct 108708 CAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACAAC 108767
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| ||||| |||||||| |||||||| ||
Sbjct 108768 ATCCAAAAGGAGTCCACCTTACATTTGGT 108796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337944116555168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |