Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4409 141 2e-28 seq2259 129 1e-24 seq1411 123 6e-23 seq15676 96.9 8e-15 >seq4409 Length=33873 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||| | ||| ||||||| |||||| | || ||||| || || || || Sbjct 17953 GTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCG 17894 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| | || || ||||| |||||||| ||||||||||| || || ||| ||| Sbjct 17893 GCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGAATTTTTGCCTTT 17834 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| || ||||| || | ||| || || | ||||| ||||||||||| || || Sbjct 17833 ACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTC 17774 Query 225697 TTTATGAACACTTGCATT 225714 |||| ||| | |||||| Sbjct 17773 TTTACGAAAATCTGCATT 17756 >seq2259 Length=79244 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| || ||||| || ||||||| ||| || |||| | || | || Sbjct 78073 TCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAGAGGGTGCGACC 78132 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || || || || ||||| ||||| | ||||||||||| || || |||||||| || Sbjct 78133 ATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTT 78192 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| || || || ||| ||| ||| |||||||| || | ||| || || | ||||| Sbjct 78193 GTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGAT 78252 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | |||||| | ||| | |||||| Sbjct 78253 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 123 bits (136), Expect = 6e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 |||||||| | ||||| || | | || | || ||||| ||||| || ||||||||| Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || || ||||||||||| || || || ||||||||||| || |||||| ||||| | Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 ||||| ||||| || | ||| || || || ||||| || || || || | ||||| | | Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 225703 AACACTTGCATTTTAT 225718 || | |||||| ||| Sbjct 105710 AAAATCTGCATTCTAT 105695 Score = 84.2 bits (92), Expect = 5e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 225601 GGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGT 225659 || ||||| ||||| |||||||| || ||| |||| || ||| ||||||||||||| Sbjct 108003 GGGGGAATTCCTTCTTTGTCTTGAAT-TTTAGCTTTTACGTTTTCAATGGTGTCTGAGGG 107945 Query 225660 TTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||| || ||||| || || |||||||| |||| ||||||| ||| Sbjct 107944 TTCTACTTCTAATGTAATTGTCTTGCCAGTCAGGGTTTTTACGAA 107900 >seq15676 Length=1149 Score = 96.9 bits (106), Expect = 8e-15 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | Sbjct 1016 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 957 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGC 7854 |||||| || |||||||||| ||||||||| ||||| | | |||| ||| | ||| || Sbjct 956 CCGTCAATTCCTTTGAGTTTCAACCTTGCGATCGTACTCCCCAGGCGGAGTGCTTATTGC 897 Query 7855 GTTAGCTT 7862 |||| ||| Sbjct 896 GTTAACTT 889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192288320151824