Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 414 8e-111
>seq2028
Length=154558
Score = 414 bits (458), Expect = 8e-111
Identities = 626/888 (70%), Gaps = 2/888 (0%)
Strand=Plus/Plus
Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307
||||||| ||| | |||||| ||| |||||| || || || ||||| ||||||
Sbjct 59767 ACACCAACTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTA 59826
Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367
||||| | |||||| ||||||||||| ||||| || ||| | || ||
Sbjct 59827 GAAATGATCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAAT 59886
Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427
| | ||| || ||||||||||||||||||||||| | ||| | || ||| || |||
Sbjct 59887 TCACTTAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATT 59946
Query 4428 CCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCT 4487
||||| | || || || | || | | ||| |||||||||||||| || || || |||
Sbjct 59947 CCAATCAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCT 60006
Query 4488 GTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA 4547
| || ||| ||| | | |||| |||||||| | | | | || | |||
Sbjct 60007 GCAATAATACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAG 60066
Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607
|| |||||||||||||| | |||||| |||||| |||| ||| || ||||| |||||
Sbjct 60067 CATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAA 60126
Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667
|||||||| | ||| | || || | ||| || || || ||||| ||| || ||
Sbjct 60127 CCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAA 60186
Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727
|||||||| ||||| ||||| || || |||| ||||||||| | ||| ||
Sbjct 60187 ATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTA 60246
Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787
||||| |||| ||||| | |||||| |||||||| ||||| || || | |||||||||
Sbjct 60247 ATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTA 60306
Query 4788 AATAATTTACT-TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846
|| || ||| ||||||| || || ||||| || || || ||| ||| |||||
Sbjct 60307 AACAA-GAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACAT 60365
Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906
||||||||| |||||||| || |||||||| ||||| ||||| || | |||||| || ||
Sbjct 60366 TTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCAC 60425
Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966
||||||||| | || || | ||| || | || || ||||| ||||| || ||| ||
Sbjct 60426 TTGAACTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGC 60485
Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026
|||||| || || || || || || || | |||| |||| || ||||| | ||||||
Sbjct 60486 AAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTG 60545
Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086
| | ||| | || | || ||||| || ||||||||| || ||||| |||| ||
Sbjct 60546 TCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTT 60605
Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134
||| | ||||||||| || | | ||| || | || ||||||||
Sbjct 60606 GTATTTCTGCCAAATATCTGGGAATTCAATTGGGAATAAAACAAATCT 60653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426966866613368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |