Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2028 376 3e-99 seq820 197 2e-45 >seq2028 Length=154558 Score = 376 bits (416), Expect = 3e-99 Identities = 638/919 (69%), Gaps = 9/919 (1%) Strand=Plus/Plus Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900 || || | ||| | |||||| ||||| || || ||||| || ||||| ||||| Sbjct 59767 ACACCAACTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTA 59826 Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960 || || | |||||| ||||| ||||| |||| ||| ||||| || | |||||| Sbjct 59827 GAAATGATCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAAT 59886 Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020 || | || | ||| || || ||||||||||| ||||| || ||||||||| Sbjct 59887 TCACTTAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATT 59946 Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080 || || || | ||||| | |||||| | | ||||||||||| || || || ||||| Sbjct 59947 CCAATCAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCT 60006 Query 48081 ACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAA 48140 | || || ||||| |||| | |||| | || |||| || | ||| Sbjct 60007 GCAATAATACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAG 60066 Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 ||||||||||||||||| |||||||||||||| || ||||| || |||||||| | | Sbjct 60067 CATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAA 60126 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || |||||||| || | ||| || || || || |||| | ||| || || Sbjct 60127 CCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGC-AAAGCTACCACTGAAAAA 60185 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAAC-----TGGCTTCGTTG 48314 |||||||| ||||| ||||| || | ||| || ||| ||| || |||| Sbjct 60186 AATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCG-AACGAGGATGTTTTCGAGC 60244 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | |||||| | | ||||||||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 60245 TA-ATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCG 60303 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 ||||| | || | |||||||||| ||| | | || || || || | || ||| Sbjct 60304 TTAAACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTAC 60363 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 ||||| || || |||||||||||||| ||||| ||||| |||||||| | ||||| || Sbjct 60364 ATTTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTC 60423 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | || || || || || ||||| | | |||||||||||| || ||||| ||| Sbjct 60424 ACTTGAACTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCA 60483 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 |||||||| ||||| || || ||| |||| | ||| | || ||||||| | |||| Sbjct 60484 GCAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAG 60543 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | | ||| | | | || ||||| || | |||||||| || || || |||| Sbjct 60544 TGTCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCC 60603 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 || || | | ||| ||||| | ||| |||||||| | ||||||||| || ||| Sbjct 60604 TTGTATTTCTGCCAAATATCTGGGAATTCAATTGGGAATAAAACAAATCTTCGAGGGTTT 60663 Query 48735 TTTGCAAGGATAGGTTCCA 48753 | | || | |||||||| Sbjct 60664 TCTTTCAGTAAAGGTTCCA 60682 >seq820 Length=22770 Score = 197 bits (218), Expect = 2e-45 Identities = 426/650 (66%), Gaps = 68/650 (10%) Strand=Plus/Minus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||| | || ||||| || ||| | |||||||||||| | || ||||||||| ||| Sbjct 22460 TTATCAACGGTGAACTGTATGGGATTGGCTGCGGGTTTTGTTCTTAAATAGTACATTCCA 22401 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCAT---GCTTGTCAGTTTGGAATAACTA 76889 ||||| |||||| |||| ||||| || ||||| || | | | ||| || Sbjct 22400 GTTTTAAGACCCTTTTTCCAACCGTAAAAGTGCATTGAGCAT---AATACCCCATAGGTA 22344 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || | || || ||||| || | ||| |||||||||| ||||| |||||||| ||| Sbjct 22343 GGTTTCGCGATGTGAATGTTTAAACTTTGAGTTTGATCGATAAAAGCGCCTCTATCCGCC 22284 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 ||||| | ||| || |||||||||||||||||||| ||||||| | | | ||| | | Sbjct 22283 GCCATGTCTATGATTACCTTTTGAGGAATTTCCCAAACAGTTTTGTAGATTGTTTTTAAA 22224 Query 77010 TCATCTGGAA-----GGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCT 77064 ||| |||| ||| ||| |||| || || || | || | || |||| ||| | Sbjct 22223 TCACTAGGAATTCCAGGTATGT--TTTGGATTGACCCTCGATTGGCTAGAATTTGATTTT 22166 Query 77065 TTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATT----- 77119 | || |||||| ||||||| || || ||||| || | || | ||| |||| Sbjct 22165 TCATCACATCATCCCACAATCCTCTTTCAGTTAAGTCTTTTAGTAAGTGATGATTGACGA 22106 Query 77120 --------------------AACTATT------------------------------TGA 77129 ||||||| || Sbjct 22105 TCTGAAAAATATTTTAATTGAACTATTCGCTATTTTGAAGGTACTATTATTTTAACCTGG 22046 Query 77130 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 77189 ||||| || || | ||||||||||||||||| ||||| || || ||||| | | ||| Sbjct 22045 AATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATACTCTCA 21986 Query 77190 TTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTT 77249 ||||| || |||||||||||||| ||||| || |||||||| |||| | || ||| Sbjct 21985 TTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAGGAGTTT 21926 Query 77250 CTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGT 77309 || | |||||| | ||||| |||| | | ||||||||| | |||||| ||| Sbjct 21925 CTTAATCCATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAATCTGACGGT 21866 Query 77310 ACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCC 77359 || ||||| | |||||||||||||||||| | || ||| ||||| Sbjct 21865 TTCACGTCCCACATATCGTATTGTAGAATTCCTTGGCTTGCAGGCGATCC 21816 Score = 183 bits (202), Expect = 4e-41 Identities = 296/423 (70%), Gaps = 6/423 (1%) Strand=Plus/Minus Query 78081 TTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATA 78140 ||||| |||| | ||| || | || ||| | |||||||||||| | ||| || || | | Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940 Query 78141 ACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTC 78200 ||||||||| ||||||||| |||||||| | |||| |||| || |||||| | ||| | Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880 Query 78201 AACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCG 78260 | ||| |||| | ||| || || || |||||||| |||| ||||||| | || ||| Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820 Query 78261 CGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 | ||||||| || || || ||||||||||| | || || || | ||| || | Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACATTGA 19760 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATC---CATCATGTTAAGAAGAAAACAG 78377 | | | ||| || ||||| | ||| || || ||||| ||| ||| ||||| Sbjct 19759 GTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCA--TTAGCAAG-AAACAA 19703 Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||| ||| | || ||||||||||||| || ||| |||||||| || Sbjct 19702 GAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAAA 19643 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 |||||| || || |||||| ||||||||||| | || |||||| | |||||| Sbjct 19642 TATTTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATGAATG 19583 Query 78498 CCT 78500 ||| Sbjct 19582 CCT 19580 Score = 158 bits (174), Expect = 2e-33 Identities = 233/329 (71%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 77511 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATA 77570 || |||| ||| ||||| |||||||||||||||||||||||| ||| |||||||| | | Sbjct 21554 CCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAGA 21495 Query 77571 GGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCC 77630 || ||||| || || || ||||| ||||| | |||||| |||| |||| | | Sbjct 21494 GGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATATTT 21435 Query 77631 TTTAGTTTAAGAAAATCAAATC---TTCCATCT---ATAACAAACATGTTCAAAGCTATA 77684 || ||||| ||||||||| | ||| |||| ||||||||||||||| || ||| Sbjct 21434 TTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTATT 21375 Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACAT 77744 || || |||||||| || || | || | | | |||| || || || | ||| Sbjct 21374 GAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAACAA 21315 Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804 || ||||| | ||| || |||| || | ||| || ||| ||||||| | ||| Sbjct 21314 AGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCGTCT 21255 Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTC 77833 || ||||| ||| | ||||| || ||||| Sbjct 21254 TTGTAAAGCATATAAGGAGTACCAGTTTC 21226 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 |||| ||||| | ||| | |||||| ||||||||||| || | || ||| ||||| Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617 || || || || |||||| |||||||||||||||||||||||| ||||| ||||| || Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407 Query 78618 TAAATAATAACAGAATTTAGT 78638 || |||||| ||||||||| Sbjct 19406 TAGATAATATTGGAATTTAGT 19386 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78744 CTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATA 78803 |||||| ||||||| ||||| || || ||||| || | || ||||| || || ||||| Sbjct 19222 CTAAATTGTTTTTTAGTTTCTTTATGCAGATTTGAGATTGCAATTCTAGCTGCAAGAATT 19163 Query 78804 GCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAAC 78863 |||||||||||||| | | |||| | || || ||||||| |||||| | || | Sbjct 19162 GCATAATCAGGATGGTCTATAGTCATCATAGCGGCAGTTTCTGCAGCTAAAGTGTCGAGT 19103 Query 78864 TCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906 || | ||||| || || || || || || |||||||||| Sbjct 19102 TCGACTGTTGTAACTCCTGGGTAGAGACCCTGGATAACTTTCA 19060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694530769309440