Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2028 354 1e-92 seq820 183 4e-41 >seq2028 Length=154558 Score = 354 bits (392), Expect = 1e-92 Identities = 616/889 (69%), Gaps = 9/889 (1%) Strand=Plus/Plus Query 46360 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTA 46419 || || ||||| || ||||| ||||| || || | |||||| ||||||||||| Sbjct 59797 TTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATAAAGTCAAACGGATTC 59856 Query 46420 GTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCT 46479 || || ||| ||||| || | |||||||| | || | ||| || || |||||| Sbjct 59857 GTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGATCAGCTACAAATTCT 59916 Query 46480 ATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTA 46539 |||||| ||||| || ||||||||||| || || |||| || | |||||| | Sbjct 59917 ATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACTGGCAAAGCCTCAGAC 59976 Query 46540 AGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTT 46599 | ||||||||||| || || || ||||| | || || |||||| |||| | | Sbjct 59977 AAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTTACTCTTTCTTGTGAT 60036 Query 46600 GGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCT 46659 ||| || || |||| || | ||| ||||||||||||||||| || ||||||||| Sbjct 60037 GGTTTCTGATGCAGATGTGAGAATAGTAAGCATGCAAAATCACAATGTAGACCTTCATCT 60096 Query 46660 CTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAA 46719 || || ||||| || |||||||| | || ||||| || ||||| || || | ||| Sbjct 60097 CTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGACCACGTTTCTTTAACCAG 60156 Query 46720 AATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAG 46778 || || || || |||| | ||| || || |||||||| || || || || || || | Sbjct 60157 AAAATCGCTGC-AAAGCTACCACTGAAAAAAATGCCTTCAACGGCAGCAAAAGCCACCAA 60215 Query 46779 TCTCTCTCCGTAACTGGCATCATTATG----AATCCACCTTTGAGCCCAATCAGCCTTTT 46834 ||| || ||| ||| | || || | ||||||| || | ||||||||||| || | Sbjct 60216 TCTTTCGCCG-AACGAGGATGTTTTCGAGCTAATCCACTTTAGGGCCCAATCAGCTTTCT 60274 Query 46835 TCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTT 46894 |||| ||||| ||||| ||||| ||||| ||||| | || | |||||||| ||| Sbjct 60275 TCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCTTTTTCATTGGGATCGC 60334 Query 46895 TAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCT 46954 | | ||| || || || | || |||||||| ||||| || |||||||| || |||| Sbjct 60335 TGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATATTTTCAATTGCAATCT 60394 Query 46955 GAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACA 47014 | ||||| |||||||| | |||||||| | || || ||| || || ||||| ||| Sbjct 60395 GGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTGACTGAAACGTTC-CACA 60453 Query 47015 A-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAA 47073 | ||||||||| || || ||||| ||||||||||| || || || || ||| ||| Sbjct 60454 AGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAACACGTGCGAAATGAAA 60513 Query 47074 TATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 47133 | | ||| || | ||||||| | ||||| | ||| | | | || ||||| Sbjct 60514 TGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATGGGTGAGGTCCACTTCC 60573 Query 47134 TCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGG 47193 || | ||||| || || || || |||| || || | | ||| ||||| | ||| Sbjct 60574 TCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCAAATATCTGGGAATTCA 60633 Query 47194 ATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTCCA 47242 || || || | ||||||||| || |||| | |||| |||||||| Sbjct 60634 ATTGGGAATAAAACAAATCTTCGAGGGTTTTCTTTCAGTAAAGGTTCCA 60682 >seq820 Length=22770 Score = 183 bits (202), Expect = 4e-41 Identities = 299/427 (70%), Gaps = 14/427 (3%) Strand=Plus/Minus Query 76676 TTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATA 76735 ||||| |||| | || || | || ||| | |||||||||||| | ||| || || | | Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940 Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 | || |||| ||||||||| |||||||| | |||| ||||||| |||||| | ||| | Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| |||| | || || || || |||||||| |||| ||||||| | || ||| Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 | ||||||| || | || || ||||||||||| |||| || || | |||||| Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACA---- 19764 Query 76916 TTCAATGTGTCA----TAGATGCCCTCTATACTATCATC---CATCATGTTAAGAAGAAA 76968 || | || | || || || ||||| | |||||| || ||||| ||| ||| || Sbjct 19763 TTGAGTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCA--TTAGCAAG-AA 19707 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 ||| ||||| ||| | || |||||||||| || |||||| ||||| || Sbjct 19706 ACAAGAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGT 19647 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATG 77088 ||| |||||| || || |||||| ||||||||| | || || || ||| | ||| Sbjct 19646 GAAATATTTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATG 19587 Query 77089 AATTCCT 77095 ||| ||| Sbjct 19586 AATGCCT 19580 Score = 174 bits (192), Expect = 2e-38 Identities = 256/362 (71%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 ||||| | |||||||| |||||| || ||| |||||||| | || ||||||||| ||| Sbjct 22460 TTATCAACGGTGAACTGTATGGGATTGGCTGCGGGTTTTGTTCTTAAATAGTACATTCCA 22401 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| |||||| |||| ||||| || ||||| || | ||| | || Sbjct 22400 GTTTTAAGACCCTTTTTCCAACCGTAAAAGTGCATTGAGCATAATACCCCATAGGTAGGT 22341 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 | || || ||||| || | ||| |||||||||| ||||| |||||||| |||||| Sbjct 22340 TTCGCGATGTGAATGTTTAAACTTTGAGTTTGATCGATAAAAGCGCCTCTATCCGCCGCC 22281 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607 || | ||| || |||||||||||||||||||| ||||||| | | | ||| | |||| Sbjct 22280 ATGTCTATGATTACCTTTTGAGGAATTTCCCAAACAGTTTTGTAGATTGTTTTTAAATCA 22221 Query 75608 TCTGGAA---GATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATC 75664 |||| | | | ||||| || || || | || | || |||| ||| || ||| Sbjct 22220 CTAGGAATTCCAGGTATGTTTTGGATTGACCCTCGATTGGCTAGAATTTGATTTTTCATC 22161 Query 75665 TCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGA 75724 |||||| ||||||| ||| || ||||| || | || | ||| |||| || || ||| Sbjct 22160 ACATCATCCCACAATCCTCTTTCAGTTAAGTCTTTTAGTAAGTGATGATTGACGATCTGA 22101 Query 75725 AA 75726 || Sbjct 22100 AA 22099 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||| || || | ||||| ||||||||||| ||||| || || ||||| | | Sbjct 22048 TGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATACTC 21989 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||||| || |||||||||||||||||||| || |||||||| |||| | || Sbjct 21988 TCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAGGAG 21929 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 ||||| | |||||| | ||||| |||| | | ||||||||| | |||||| Sbjct 21928 TTTCTTAATCCATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAATCTGAC 21869 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCC 75954 ||| || ||||| | |||||||||||||||||| | ||| ||| ||||| Sbjct 21868 GGTTTCACGTCCCACATATCGTATTGTAGAATTCCTTGGCTTGCAGGCGATCC 21816 Score = 140 bits (154), Expect = 5e-28 Identities = 233/333 (70%), Gaps = 8/333 (2%) Strand=Plus/Minus Query 76103 AGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGA 76162 || || |||| ||| ||||| |||||||||||||||||||||||| |||| |||||||| Sbjct 21557 AGACCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGT 21498 Query 76163 ATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACG 76222 | ||||||||| || ||||| ||||| ||||| | ||||| |||| |||| | Sbjct 21497 AGAGGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATA 21438 Query 76223 TCCTTTAGTTTGAGAAAATCAAA---TTTTCCATCT---ATCACAAACATATTAAGAGCT 76276 | || ||||| ||||||||| |||| |||| | |||||||| || | || | Sbjct 21437 TTTTTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGT 21378 Query 76277 ATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTG 76336 || || || |||||||| || || | || | | | |||| || || || | Sbjct 21377 ATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAA 21318 Query 76337 CATAGATTACTACACTTGAT-AGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGA 76395 || || ||||| | || || | | ||||| || | ||| || ||| | || || | Sbjct 21317 CAAAGGTTACTGCCTTTTATCACTCCCAAG-TTCTTTTGATTAGATTTTCTATTGCAAGC 21259 Query 76396 GTCCTTATAAAGAACAAACGGAGTTCCAGTTTC 76428 ||| || ||||| | | | ||||| |||||||| Sbjct 21258 GTCTTTGTAAAGCATATAAGGAGTACCAGTTTC 21226 Score = 123 bits (136), Expect = 4e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 |||| || || | ||| | |||||| ||||||| ||| ||| | || ||| ||||| Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 || || || || |||||| |||||||||||||||||||||||| ||||| ||||| || Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407 Query 77213 TAAATAATAACCGAATTTAGTTTGTCCTTAT 77243 || |||||| ||||||||| |||||||| Sbjct 19406 TAGATAATATTGGAATTTAGTCGGTCCTTAT 19376 Score = 113 bits (124), Expect = 6e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 |||||||| ||||||| ||||| || || ||||| || | || |||||||| || |||| Sbjct 19224 CGCTAAATTGTTTTTTAGTTTCTTTATGCAGATTTGAGATTGCAATTCTAGCTGCAAGAA 19165 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 ||||||| |||||||| | | |||| | || || ||||||| |||||||| || | Sbjct 19164 TTGCATAATCAGGATGGTCTATAGTCATCATAGCGGCAGTTTCTGCAGCTAAAGTGTCGA 19105 Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 77501 ||| | || |||||||| || || || || |||||||||| Sbjct 19104 GTTCGACTGTTGTAACTCCTGGGTAGAGACCCTGGATAACTTTCA 19060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712792739934720