Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 354 1e-92
seq820 183 4e-41
>seq2028
Length=154558
Score = 354 bits (392), Expect = 1e-92
Identities = 616/889 (69%), Gaps = 9/889 (1%)
Strand=Plus/Plus
Query 46360 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTA 46419
|| || ||||| || ||||| ||||| || || | |||||| |||||||||||
Sbjct 59797 TTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATAAAGTCAAACGGATTC 59856
Query 46420 GTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCT 46479
|| || ||| ||||| || | |||||||| | || | ||| || || ||||||
Sbjct 59857 GTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGATCAGCTACAAATTCT 59916
Query 46480 ATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTA 46539
|||||| ||||| || ||||||||||| || || |||| || | |||||| |
Sbjct 59917 ATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACTGGCAAAGCCTCAGAC 59976
Query 46540 AGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTT 46599
| ||||||||||| || || || ||||| | || || |||||| |||| | |
Sbjct 59977 AAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTTACTCTTTCTTGTGAT 60036
Query 46600 GGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCT 46659
||| || || |||| || | ||| ||||||||||||||||| || |||||||||
Sbjct 60037 GGTTTCTGATGCAGATGTGAGAATAGTAAGCATGCAAAATCACAATGTAGACCTTCATCT 60096
Query 46660 CTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAA 46719
|| || ||||| || |||||||| | || ||||| || ||||| || || | |||
Sbjct 60097 CTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGACCACGTTTCTTTAACCAG 60156
Query 46720 AATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAG 46778
|| || || || |||| | ||| || || |||||||| || || || || || || |
Sbjct 60157 AAAATCGCTGC-AAAGCTACCACTGAAAAAAATGCCTTCAACGGCAGCAAAAGCCACCAA 60215
Query 46779 TCTCTCTCCGTAACTGGCATCATTATG----AATCCACCTTTGAGCCCAATCAGCCTTTT 46834
||| || ||| ||| | || || | ||||||| || | ||||||||||| || |
Sbjct 60216 TCTTTCGCCG-AACGAGGATGTTTTCGAGCTAATCCACTTTAGGGCCCAATCAGCTTTCT 60274
Query 46835 TCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTT 46894
|||| ||||| ||||| ||||| ||||| ||||| | || | |||||||| |||
Sbjct 60275 TCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCTTTTTCATTGGGATCGC 60334
Query 46895 TAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCT 46954
| | ||| || || || | || |||||||| ||||| || |||||||| || ||||
Sbjct 60335 TGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATATTTTCAATTGCAATCT 60394
Query 46955 GAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACA 47014
| ||||| |||||||| | |||||||| | || || ||| || || ||||| |||
Sbjct 60395 GGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTGACTGAAACGTTC-CACA 60453
Query 47015 A-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAA 47073
| ||||||||| || || ||||| ||||||||||| || || || || ||| |||
Sbjct 60454 AGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAACACGTGCGAAATGAAA 60513
Query 47074 TATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 47133
| | ||| || | ||||||| | ||||| | ||| | | | || |||||
Sbjct 60514 TGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATGGGTGAGGTCCACTTCC 60573
Query 47134 TCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGG 47193
|| | ||||| || || || || |||| || || | | ||| ||||| | |||
Sbjct 60574 TCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCAAATATCTGGGAATTCA 60633
Query 47194 ATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTCCA 47242
|| || || | ||||||||| || |||| | |||| ||||||||
Sbjct 60634 ATTGGGAATAAAACAAATCTTCGAGGGTTTTCTTTCAGTAAAGGTTCCA 60682
>seq820
Length=22770
Score = 183 bits (202), Expect = 4e-41
Identities = 299/427 (70%), Gaps = 14/427 (3%)
Strand=Plus/Minus
Query 76676 TTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATA 76735
||||| |||| | || || | || ||| | |||||||||||| | ||| || || | |
Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940
Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795
| || |||| ||||||||| |||||||| | |||| ||||||| |||||| | ||| |
Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880
Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855
| ||| |||| | || || || || |||||||| |||| ||||||| | || |||
Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820
Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915
| ||||||| || | || || ||||||||||| |||| || || | ||||||
Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACA---- 19764
Query 76916 TTCAATGTGTCA----TAGATGCCCTCTATACTATCATC---CATCATGTTAAGAAGAAA 76968
|| | || | || || || ||||| | |||||| || ||||| ||| ||| ||
Sbjct 19763 TTGAGTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCA--TTAGCAAG-AA 19707
Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028
||| ||||| ||| | || |||||||||| || |||||| ||||| ||
Sbjct 19706 ACAAGAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGT 19647
Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATG 77088
||| |||||| || || |||||| ||||||||| | || || || ||| | |||
Sbjct 19646 GAAATATTTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATG 19587
Query 77089 AATTCCT 77095
||| |||
Sbjct 19586 AATGCCT 19580
Score = 174 bits (192), Expect = 2e-38
Identities = 256/362 (71%), Gaps = 3/362 (1%)
Strand=Plus/Minus
Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427
||||| | |||||||| |||||| || ||| |||||||| | || ||||||||| |||
Sbjct 22460 TTATCAACGGTGAACTGTATGGGATTGGCTGCGGGTTTTGTTCTTAAATAGTACATTCCA 22401
Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487
||||| |||||| |||| ||||| || ||||| || | ||| | ||
Sbjct 22400 GTTTTAAGACCCTTTTTCCAACCGTAAAAGTGCATTGAGCATAATACCCCATAGGTAGGT 22341
Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547
| || || ||||| || | ||| |||||||||| ||||| |||||||| ||||||
Sbjct 22340 TTCGCGATGTGAATGTTTAAACTTTGAGTTTGATCGATAAAAGCGCCTCTATCCGCCGCC 22281
Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607
|| | ||| || |||||||||||||||||||| ||||||| | | | ||| | ||||
Sbjct 22280 ATGTCTATGATTACCTTTTGAGGAATTTCCCAAACAGTTTTGTAGATTGTTTTTAAATCA 22221
Query 75608 TCTGGAA---GATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATC 75664
|||| | | | ||||| || || || | || | || |||| ||| || |||
Sbjct 22220 CTAGGAATTCCAGGTATGTTTTGGATTGACCCTCGATTGGCTAGAATTTGATTTTTCATC 22161
Query 75665 TCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGA 75724
|||||| ||||||| ||| || ||||| || | || | ||| |||| || || |||
Sbjct 22160 ACATCATCCCACAATCCTCTTTCAGTTAAGTCTTTTAGTAAGTGATGATTGACGATCTGA 22101
Query 75725 AA 75726
||
Sbjct 22100 AA 22099
Score = 145 bits (160), Expect = 1e-29
Identities = 172/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
|| ||||| || || | ||||| ||||||||||| ||||| || || ||||| | |
Sbjct 22048 TGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATACTC 21989
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
|||||||| || |||||||||||||||||||| || |||||||| |||| | ||
Sbjct 21988 TCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAGGAG 21929
Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901
||||| | |||||| | ||||| |||| | | ||||||||| | ||||||
Sbjct 21928 TTTCTTAATCCATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAATCTGAC 21869
Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCC 75954
||| || ||||| | |||||||||||||||||| | ||| ||| |||||
Sbjct 21868 GGTTTCACGTCCCACATATCGTATTGTAGAATTCCTTGGCTTGCAGGCGATCC 21816
Score = 140 bits (154), Expect = 5e-28
Identities = 233/333 (70%), Gaps = 8/333 (2%)
Strand=Plus/Minus
Query 76103 AGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGA 76162
|| || |||| ||| ||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct 21557 AGACCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGT 21498
Query 76163 ATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACG 76222
| ||||||||| || ||||| ||||| ||||| | ||||| |||| |||| |
Sbjct 21497 AGAGGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATA 21438
Query 76223 TCCTTTAGTTTGAGAAAATCAAA---TTTTCCATCT---ATCACAAACATATTAAGAGCT 76276
| || ||||| ||||||||| |||| |||| | |||||||| || | || |
Sbjct 21437 TTTTTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGT 21378
Query 76277 ATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTG 76336
|| || || |||||||| || || | || | | | |||| || || || |
Sbjct 21377 ATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAA 21318
Query 76337 CATAGATTACTACACTTGAT-AGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGA 76395
|| || ||||| | || || | | ||||| || | ||| || ||| | || || |
Sbjct 21317 CAAAGGTTACTGCCTTTTATCACTCCCAAG-TTCTTTTGATTAGATTTTCTATTGCAAGC 21259
Query 76396 GTCCTTATAAAGAACAAACGGAGTTCCAGTTTC 76428
||| || ||||| | | | ||||| ||||||||
Sbjct 21258 GTCTTTGTAAAGCATATAAGGAGTACCAGTTTC 21226
Score = 123 bits (136), Expect = 4e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152
|||| || || | ||| | |||||| ||||||| ||| ||| | || ||| |||||
Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467
Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212
|| || || || |||||| |||||||||||||||||||||||| ||||| ||||| ||
Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407
Query 77213 TAAATAATAACCGAATTTAGTTTGTCCTTAT 77243
|| |||||| ||||||||| ||||||||
Sbjct 19406 TAGATAATATTGGAATTTAGTCGGTCCTTAT 19376
Score = 113 bits (124), Expect = 6e-20
Identities = 124/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396
|||||||| ||||||| ||||| || || ||||| || | || |||||||| || ||||
Sbjct 19224 CGCTAAATTGTTTTTTAGTTTCTTTATGCAGATTTGAGATTGCAATTCTAGCTGCAAGAA 19165
Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456
||||||| |||||||| | | |||| | || || ||||||| |||||||| || |
Sbjct 19164 TTGCATAATCAGGATGGTCTATAGTCATCATAGCGGCAGTTTCTGCAGCTAAAGTGTCGA 19105
Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 77501
||| | || |||||||| || || || || ||||||||||
Sbjct 19104 GTTCGACTGTTGTAACTCCTGGGTAGAGACCCTGGATAACTTTCA 19060
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712792739934720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |