Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq7622 95.1 2e-14 >seq7622 Length=2935 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/218 (71%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 3065 GCAGACTGTAAATCTGTTGCCTTCGGGCTTCGTAGGTTCAAATCCTTCCCTCGCCACCA- 3123 || |||||||| || | | ||| | | |||| ||||| ||||| |||| | |||||| Sbjct 2879 GCGGACTGTAACTCCGCTCTCTTAGAG-TTCGGCGGTTCGAATCCGTCCCCCACCACCAT 2821 Query 3124 --AATTCTAGGGGTATAGCCAAGCGGTAAGGCCCAGGGCTTTGATCCCTGTATGCTCTGG 3181 || | ||| ||| ||||||||||||||| || |||||| || |||| | || Sbjct 2820 TTAAAAATTGGGCTATCGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTCATGCGCAGG 2761 Query 3182 TTCAAATCCAGATGCCCCTTCCATTTTATTGT---CTCGTAGCTCAGTTGGTCAGAGCGC 3238 ||||||||| | | ||| |||||| ||| | || ||||||||||||| ||||| Sbjct 2760 TTCAAATCCTGCTAGCCCAGCCATTTAATTATGTCCTGTTAGCTCAGTTGGT-AGAGCAT 2702 Query 3239 TCGCCTGATAAGCGGGAGGTCAGTGGTTCAAGTCCACT 3276 | || ||| | | |||||| ||||| | ||| || Sbjct 2701 CTGACTTTTAATCAGAGGGTCAGAGGTTCGAATCCTCT 2664 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 3204 ATTTTATTGTCTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTG 3263 ||| ||| | | ||||||||| |||| ||||||| ||||||||||||| |||||| ||| Sbjct 2126 ATTATATGGGCCTGTAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTG 2067 Query 3264 GTTCAAGTCCACTC 3277 |||| ||||||||| Sbjct 2066 GTTCGAGTCCACTC 2053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783204346368000