Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4409 131 4e-25 seq1411 89.7 1e-12 >seq4409 Length=33873 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| || || | ||| | ||||| || ||||| || || ||||||| ||||| Sbjct 17977 CTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTC 17918 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || ||| ||||||||||| | ||||||||||| | || |||||| Sbjct 17917 CGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCT 17858 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||||||| || ||| | || | |||| || || || |||||| Sbjct 17857 TCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGA 17798 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || |||||||| | ||||| ||||| | ||||||| Sbjct 17797 GTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATT 17756 >seq1411 Length=135556 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | || ||||| |||||||||||||| || | | ||| | ||||| Sbjct 108800 GAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATC 108741 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| || |||||||| | ||||||||| || | | |||||||| || || Sbjct 108740 TTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTC 108681 Query 152012 TTGAATTTT 152020 ||||||||| Sbjct 108680 TTGAATTTT 108672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153585804202216