Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4409 172 1e-37 seq1411 163 6e-35 seq2259 159 7e-34 >seq4409 Length=33873 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| ||||| |||| |||||| || ||| ||||| || || || || | Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || || || |||||||| ||||| |||||||| | || ||||| |||| Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || || ||||| ||||| | || ||||||||||| | |||||| Sbjct 17863 ATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACC 17804 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || |||||||| ||||| ||||| || ||||| ||||| ||||||||| Sbjct 17803 TCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATT 17756 >seq1411 Length=135556 Score = 163 bits (180), Expect = 6e-35 Identities = 160/206 (78%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| ||||||||||| | || |||||||| || || || ||||| || || ||| Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||||||||| || || || |||||||| || ||||||||||| ||| | Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| |||| ||| ||||| | ||||| || ||||| || | || || ||| Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 283089 AATATCTGCATTTTCATATACAAATA 283114 || ||||||||| |||| ||||| Sbjct 105710 AAAATCTGCATT---CTATAAAAATA 105688 Score = 125 bits (138), Expect = 1e-23 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| |||||| ||| || ||||||||||||||||||| Sbjct 108814 CCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 108755 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || |||||||| || || |||||||| | || || || ||| Sbjct 108754 AGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 108695 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAG 283044 || || || |||||||| || || |||||||| | || ||||| || |||| Sbjct 108694 ATTCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAG 108643 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||| ||| || || ||||| |||| |||||| |||||||| Sbjct 108552 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAA 108493 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 ||||| | |||||||| |||||||| |||||| Sbjct 108492 ATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTG 108457 >seq2259 Length=79244 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | ||||||| || | ||| || |||||||| || ||||| | Sbjct 78061 ACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGA 78120 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| |||||||| || ||||||||||||||||||||||| || Sbjct 78121 GAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGG 78180 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| || ||||| || || || || ||||| | || || ||||| || | |||||| Sbjct 78181 GATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGAC 78240 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| |||||||| || | ||| || ||||| || ||||| Sbjct 78241 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046526013243984