Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2028 262 4e-65 seq2179 96.9 4e-15 >seq2028 Length=154558 Score = 262 bits (290), Expect = 4e-65 Identities = 522/765 (68%), Gaps = 10/765 (1%) Strand=Plus/Plus Query 23209 ACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAAT 23268 ||||| | ||| | |||||| || || |||| ||||| ||||| ||||| ||| Sbjct 59767 ACACCAACTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTA 59826 Query 23269 GATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAAT 23328 || || | |||||| ||||| ||||| | | | ||| | || || |||| Sbjct 59827 GAAATGATCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAAT 59886 Query 23329 TCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATA 23388 || |||| | | ||| ||||||||||| ||||| ||||||||||| | | || || Sbjct 59887 TCACTTAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATT 59946 Query 23389 CCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCT 23448 || || || | ||||| | || ||| | ||||| || ||| || | ||| |||||| Sbjct 59947 CCAATCAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCT 60006 Query 23449 TTAATTATT-TGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAA 23507 ||| || || | | ||||| ||| | | | || || | ||| Sbjct 60007 GCAATAATACTGGTTACTCT-TTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAA 60065 Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 |||||||||||||||||||| |||||||| || ||||||||||| ||||||||||| Sbjct 60066 GCATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAA 60125 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAA 23627 || ||||| | || ||||| || | ||| || || || ||||| || || || Sbjct 60126 ACCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAA 60185 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||| || ||||| || ||||| ||||| | | | || || | | || | || Sbjct 60186 AATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGG-ATGTTTTCGAGC 60244 Query 23688 -AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTT 23746 |||||| ||| | ||||| ||| ||| || |||||| || |||||||| || | Sbjct 60245 TAATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGT 60304 Query 23747 TTAAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTAT 23803 | || | | || | |||| ||||| ||| | ||||| || ||||| ||| || | Sbjct 60305 TAAACA-AGAACTCTTTT--TCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGT 60361 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 ||||||||||||| ||||||||||| |||||||| || ||||||||||| | |||||||| Sbjct 60362 ACATTTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAG 60421 Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923 || |||||| || | | || | || | | ||| || || ||||||||||| | Sbjct 60422 TCACTTGAACTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGG 60481 Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAG 23968 ||||||| ||||| | || | || ||||||| ||| |||| Sbjct 60482 CAGCAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAG 60526 >seq2179 Length=94981 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488 ||||| | || || ||||| |||||| |||||| |||||| | ||||||||||||||| Sbjct 60211 GGTGTTTTGCACACCAAATTGTGGATTATTGATAGAAAACATCTTTATATTGGAAGTGCT 60270 Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAA 139519 |||||||| ||| | ||||| |||||||||| Sbjct 60271 AACATGGATTGGAGGTCACTGACTCAAGTAA 60301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521384380334400