Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 262 4e-65
seq2179 96.9 4e-15
>seq2028
Length=154558
Score = 262 bits (290), Expect = 4e-65
Identities = 522/765 (68%), Gaps = 10/765 (1%)
Strand=Plus/Plus
Query 23209 ACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAAT 23268
||||| | ||| | |||||| || || |||| ||||| ||||| ||||| |||
Sbjct 59767 ACACCAACTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTA 59826
Query 23269 GATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAAT 23328
|| || | |||||| ||||| ||||| | | | ||| | || || ||||
Sbjct 59827 GAAATGATCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAAT 59886
Query 23329 TCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATA 23388
|| |||| | | ||| ||||||||||| ||||| ||||||||||| | | || ||
Sbjct 59887 TCACTTAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATT 59946
Query 23389 CCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCT 23448
|| || || | ||||| | || ||| | ||||| || ||| || | ||| ||||||
Sbjct 59947 CCAATCAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCT 60006
Query 23449 TTAATTATT-TGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAA 23507
||| || || | | ||||| ||| | | | || || | |||
Sbjct 60007 GCAATAATACTGGTTACTCT-TTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAA 60065
Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567
|||||||||||||||||||| |||||||| || ||||||||||| |||||||||||
Sbjct 60066 GCATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAA 60125
Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAA 23627
|| ||||| | || ||||| || | ||| || || || ||||| || || ||
Sbjct 60126 ACCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAA 60185
Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687
||| || ||||| || ||||| ||||| | | | || || | | || | ||
Sbjct 60186 AATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGG-ATGTTTTCGAGC 60244
Query 23688 -AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTT 23746
|||||| ||| | ||||| ||| ||| || |||||| || |||||||| || |
Sbjct 60245 TAATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGT 60304
Query 23747 TTAAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTAT 23803
| || | | || | |||| ||||| ||| | ||||| || ||||| ||| || |
Sbjct 60305 TAAACA-AGAACTCTTTT--TCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGT 60361
Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863
||||||||||||| ||||||||||| |||||||| || ||||||||||| | ||||||||
Sbjct 60362 ACATTTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAG 60421
Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923
|| |||||| || | | || | || | | ||| || || ||||||||||| |
Sbjct 60422 TCACTTGAACTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGG 60481
Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAG 23968
||||||| ||||| | || | || ||||||| ||| ||||
Sbjct 60482 CAGCAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAG 60526
>seq2179
Length=94981
Score = 96.9 bits (106), Expect = 4e-15
Identities = 76/91 (84%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488
||||| | || || ||||| |||||| |||||| |||||| | |||||||||||||||
Sbjct 60211 GGTGTTTTGCACACCAAATTGTGGATTATTGATAGAAAACATCTTTATATTGGAAGTGCT 60270
Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAA 139519
|||||||| ||| | ||||| ||||||||||
Sbjct 60271 AACATGGATTGGAGGTCACTGACTCAAGTAA 60301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521384380334400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |