Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2259 159 8e-34
seq1411 150 4e-31
seq4409 138 3e-27
>seq2259
Length=79244
Score = 159 bits (176), Expect = 8e-34
Identities = 159/205 (78%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||||||||||||||| || || || |||||||| ||||| ||| || |||
Sbjct 78285 CAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATCCGAC 78226
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || || || ||||||||||||||||| ||||| || ||||| |||
Sbjct 78225 ACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCAACAA 78166
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || || ||||| || || ||||| | || || |||| ||||| ||
Sbjct 78165 CGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAATATC 78106
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||| || || || ||||| ||||
Sbjct 78105 CAAAAGGAGTCCACCCTGCA-CTTG 78082
>seq1411
Length=135556
Score = 150 bits (166), Expect = 4e-31
Identities = 146/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| || || || ||||| ||||| | || || ||| || |||
Sbjct 105703 CAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACATTGGAAGTTGAACCTTCCGAC 105762
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| ||| ||||||||||||||| ||||| ||||| || ||||| |||
Sbjct 105763 ACTATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGGATCCCCCCAGACCAACAA 105822
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || |||||||| ||||| || | || || | || || ||| |
Sbjct 105823 CGTCTCATCTTCGCTGGTAAACAGCTTGAAGACGGCCGCACCCTATCAGACTACAACATA 105882
Query 178104 CAAAAAGA 178111
||||||||
Sbjct 105883 CAAAAAGA 105890
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037
|| || || || || || || ||| || ||||| |||||||||||||| ||||| ||
Sbjct 108645 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGAT 108704
Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097
||||| | | |||||||| |||||||| || ||||||||| | ||||| | || ||
Sbjct 108705 CAGCAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTAC 108764
Query 178098 AACGTCCAAAAAGAATCAAC 178117
||| ||||||| || || ||
Sbjct 108765 AACATCCAAAAGGAGTCCAC 108784
Score = 93.3 bits (102), Expect = 1e-13
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|||||||| || || || || || || || || || |||||| || ||||| || ||
Sbjct 106342 GTGAAAACCCTAACTGGCAAGACCATTACTCTAGAAGTGGAACCTTCCGACACTATTGAA 106401
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|| || ||| ||||||||||| || ||||| || ||||| ||||||||| || | ||
Sbjct 106402 AATGTAAAAGCCAAGATTCAGGATAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATT 106461
Query 178053 TTCGCCGGAAA 178063
|| ||||||||
Sbjct 106462 TTTGCCGGAAA 106472
>seq4409
Length=33873
Score = 138 bits (152), Expect = 3e-27
Identities = 147/194 (76%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || | || || || || ||||| || ||||| ||| || |||
Sbjct 17760 CAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGAC 17819
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||| ||||||||||| |||||||| || || ||||||||
Sbjct 17820 ACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCAGCAG 17879
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| ||||| || ||||| ||| ||||| | |||||||||| |
Sbjct 17880 AGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAATATT 17939
Query 178104 CAAAAAGAATCAAC 178117
||||| ||||| ||
Sbjct 17940 CAAAAGGAATCTAC 17953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203486039075824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |