Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2259 159 8e-34 seq1411 150 4e-31 seq4409 138 3e-27 >seq2259 Length=79244 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||||||||| || || || |||||||| ||||| ||| || ||| Sbjct 78285 CAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATCCGAC 78226 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || || ||||||||||||||||| ||||| || ||||| ||| Sbjct 78225 ACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCAACAA 78166 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || || ||||| | || || |||| ||||| || Sbjct 78165 CGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAATATC 78106 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || ||||| |||| Sbjct 78105 CAAAAGGAGTCCACCCTGCA-CTTG 78082 >seq1411 Length=135556 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || ||||| ||||| | || || ||| || ||| Sbjct 105703 CAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACATTGGAAGTTGAACCTTCCGAC 105762 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| ||||||||||||||| ||||| ||||| || ||||| ||| Sbjct 105763 ACTATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGGATCCCCCCAGACCAACAA 105822 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || |||||||| ||||| || | || || | || || ||| | Sbjct 105823 CGTCTCATCTTCGCTGGTAAACAGCTTGAAGACGGCCGCACCCTATCAGACTACAACATA 105882 Query 178104 CAAAAAGA 178111 |||||||| Sbjct 105883 CAAAAAGA 105890 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || || || || || || || ||| || ||||| |||||||||||||| ||||| || Sbjct 108645 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGAT 108704 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| | | |||||||| |||||||| || ||||||||| | ||||| | || || Sbjct 108705 CAGCAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTAC 108764 Query 178098 AACGTCCAAAAAGAATCAAC 178117 ||| ||||||| || || || Sbjct 108765 AACATCCAAAAGGAGTCCAC 108784 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 |||||||| || || || || || || || || || |||||| || ||||| || || Sbjct 106342 GTGAAAACCCTAACTGGCAAGACCATTACTCTAGAAGTGGAACCTTCCGACACTATTGAA 106401 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || ||| ||||||||||| || ||||| || ||||| ||||||||| || | || Sbjct 106402 AATGTAAAAGCCAAGATTCAGGATAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATT 106461 Query 178053 TTCGCCGGAAA 178063 || |||||||| Sbjct 106462 TTTGCCGGAAA 106472 >seq4409 Length=33873 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || || || ||||| || ||||| ||| || ||| Sbjct 17760 CAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGAC 17819 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| ||||||||||| |||||||| || || |||||||| Sbjct 17820 ACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCAGCAG 17879 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| ||||| || ||||| ||| ||||| | |||||||||| | Sbjct 17880 AGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAATATT 17939 Query 178104 CAAAAAGAATCAAC 178117 ||||| ||||| || Sbjct 17940 CAAAAGGAATCTAC 17953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203486039075824