Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1211838 244 1e-59 seq1170154 125 7e-24 seq985049 120 3e-22 seq1215880 87.8 2e-12 >seq1211838 Length=1880 Score = 244 bits (270), Expect = 1e-59 Identities = 246/320 (77%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || || || ||||| || |||||||| |||||||| ||||| || || |||| ||| Sbjct 56 GAACCTCTCCTCCGCGAAAATCCCCGCCGCTTCGTGATCTTCCCTATCCAGTACCATGAC 115 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || || || |||||||| | || ||||| ||||| Sbjct 116 ATCTGGCTGATGTACAAGAAGGCAGAAGCCTCATTCTGGACAGCAGAAGAGGTCGACCTA 175 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 |||||||||| | |||||||| | | || || ||| | ||||||||| |||| Sbjct 176 TCCAAGGACATGGCTCACTGGGAGGCCCTCAAAGATGGAGAGAGGCATTTCATCTCGCAC 235 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||| ||||||| || ||||| ||||| ||||||||||||||||| || || || ||| Sbjct 236 GTGTTGGCCTTCTTTGCCGCATCGGACGGAATCGTCAACGAGAATCTCGTGGAACGGTTC 295 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 ||||| |||||| | | ||||||||||| |||||||| || ||||| || |||||| Sbjct 296 AGCCAGGAAGTGCAGATAACGGAGGCGCGGTGTTTCTACGGTTTCCAGATTGCTATGGAG 355 Query 116876 AACGTGCACTCGGAAATGTA 116895 || ||||| || || ||||| Sbjct 356 AATGTGCATTCCGAGATGTA 375 >seq1170154 Length=949 Score = 125 bits (138), Expect = 7e-24 Identities = 142/187 (76%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCA-GAGAG-GCCGCCTTCGGCGAGCGC 117040 ||||||||| ||||| || | |||||| | || ||||| || |||| |||||| | Sbjct 1 GAAGGCCGACTGGGCTCTTCAGTGGATCT--GTCACGAGAGTGCATCCTTTGGCGAGAGA 58 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 | | || || || || |||||||| ||||||| || || ||||| |||||||| || Sbjct 59 ATCATTGCATTTGCTGCAGTCGAGGGTATCTTCTTCTCCGGTAGTTTTGCCGCCATTTTC 118 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||| | |||||||| || |||||||| ||||| || |||||||||||| | ||||| | Sbjct 119 TGGTTGAAGAAACGTGGACTCATGCCTGGCCTCACATTCAGCAACGAGTTGATCTCTCGA 178 Query 117161 GACGAGG 117167 || |||| Sbjct 179 GATGAGG 185 >seq985049 Length=630 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| |||||||| |||||||| ||| | || || ||||| Sbjct 575 AAAATGCAGATTTTCGTGAAAACCCTCACGGGTAAAACCATTACCCTAGAAGTAGAAGCT 516 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | | | |||||| || || | ||||||||||||||||| | ||| Sbjct 515 TCCGATACTATCGAGAATGTCAAGGCGAAGATCCAAGACAAAGAGGGCATCCCACCAGAC 456 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || | |||| ||| || || ||| |||| || | || ||| | ||||||| Sbjct 455 CAACAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGCCGTACCTTGTCCGACTAC 396 Query 40867 AACATCCAGAAGGA 40880 |||||||| ||||| Sbjct 395 AACATCCAAAAGGA 382 >seq1215880 Length=2596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 22776 GGAGGGGGTCGTGCTCAAAGGCCGGCTTTCGT-CGTACGCGCCCAACAAGAGAGACTGGT 22834 |||||| |||||||||| || || || |||||| ||| ||| || ||||| Sbjct 1994 GGAGGGACTCGTGCTCAA-GGACGCGAAGAGTACGTACGAGCCGGGGAAGCGACACTGGC 2052 Query 22835 TCAAGATGAAGAAAGAGCACCTGTGCGACGGCGCGCTGGTCGACACCCTGGACCTGGTGG 22894 ||||||| ||||| || |||||| | || ||| ||| |||| | |||||||||||| Sbjct 2053 TCAAGATCAAGAAGGACTACCTGTTTGGGGGTGCGATGGCGGACAGCGTGGACCTGGTGG 2112 Query 22895 TGCTCGGCGCCTATTACGGCACGGGCCGCAACTGTCGCAAGATGTCAGTTTTTCTGATGG 22954 | || || || | ||||||||||| ||| | ||| |||||| || || |||| Sbjct 2113 TACTGGGGGCATGGTACGGCACGGGGGCCAAGGGGGGCATGATGTCCTCGTTCCTCATGG 2172 Query 22955 GCTGTCTGGACCGCGAGTCGAACGTGTGGACGACGGTCACCAAGGTGCACTCGGGCCTCG 23014 || | ||| | || || |||| ||||| |||||||| ||| |||| | Sbjct 2173 GCGTGCGCGACGGTGATAGCGACAGGTGGCGCACGGTGACCAAGGTTCACGGCGGCCATG 2232 Query 23015 CCGACGC 23021 |||||| Sbjct 2233 ACGACGC 2239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507373229494480