Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1197690 179 5e-40 seq1211838 138 1e-27 seq1055522 122 1e-22 seq1002630 105 8e-18 seq1170154 102 1e-16 seq277695 87.8 2e-12 >seq1197690 Length=1171 Score = 179 bits (198), Expect = 5e-40 Identities = 460/693 (66%), Gaps = 8/693 (1%) Strand=Plus/Plus Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63650 || || || || ||||||||||| || || |||| | ||| || |||||||| | Sbjct 292 GTATCGTAAATCCCTTCTATGCTGTCGTCTGACATGGCCAATAGGAAGCAGCTAGATAAC 351 Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 || | | | ||| | ||| | || | ||| || ||||| || || || || || Sbjct 352 TGAGGTCTTGGAGTAGCAGCACTGAAGAGGGTCGGGGAAGCATGAGTGAAGTATCGCTCC 411 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 || | |||| ||| ||||||||||| || || || || | || || ||||| ||| Sbjct 412 GACAAAAGATCGTAGGTCTCAATAGCGGAATCAATGTCTTCTCCGTGGATGCCTACAGCG 471 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 |||||||| | ||||||||| || | ||| || | ||| | | || | |||||| Sbjct 472 ACACGCATCAGCATGTGCTGCGGACGTTCGACGACTTTCTGATCAATGCGAAGCAAGTAC 531 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAA 63888 || |||| |||||||| ||||| || ||||| ||||| ||||| ||||| || | Sbjct 532 GAACGCTCCAGCGTTTTAAATCCAAAGTAATTGTAGCTGAAA--TCTCGATCGTAGATTA 589 Query 63889 TAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGT-AATACTTGAAATA 63947 || | ||||| || ||| || || || || | | |||| || | ||| || Sbjct 590 TAGCGGAATTAAGTCGATCAGCATTCTTTGAAATTACTTGC-TGGTGAAAATCTGAGATC 648 Query 63948 ATCGGAGAATGTTTC-CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 64006 || || | | || | ||| | | | |||| || ||||| ||||| || || Sbjct 649 ATTGGGGTAGCCCTCTTCGTTTCTTTGTTATACAT-CTTATGCAAATCTTCCATAACATC 707 Query 64007 ACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAAT 64066 ||| || ||| ||||| |||||||| | ||||| | || || | || || || || Sbjct 708 ACTGAAAGATTTCTTTGTCTCCTTGTGCAAGTTTGAGACTGCAATACGTGCAGCAAGGAT 767 Query 64067 GGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAA 64126 |||||||| || |||| || || ||||| || |||||||||||| | | || | Sbjct 768 AGCATAATCAGGGTGTTTAGTGGTCATTGTGGCGGCCGTTTCGGCTGCCAAATTATCAAG 827 Query 64127 TTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGG 64186 || || ||||| || ||| ||| | || | || |||||||| | |||| | || Sbjct 828 CTCGACAGTTGTAACGCCAGGATAGAGACCGTTGATTACCTTCATCGTTATTGCAGCCGG 887 Query 64187 ATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATC 64246 || | | |||| |||| | |||||||| | |||| ||| ||||| || || || || Sbjct 888 TTCCAGAAAATCCATGTTGAGACCATAGCAAAGTTTTTGAATTCGAGAGGTTATCTTGTC 947 Query 64247 AAACATGACATTTTCCTTGTATCCATTTCGTTT 64279 || ||| | ||| || ||||| ||||| Sbjct 948 GAAATGGACCTCTTCTTTACGTCCATCGCGTTT 980 >seq1211838 Length=1880 Score = 138 bits (152), Expect = 1e-27 Identities = 217/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || ||||| ||||| ||||| ||||| || ||||| | || || || || ||||| || Sbjct 396 TACGTATCTATCAACAGACTGTACATCTCGGAATGCACATTCTCCATAGCAATCTGGAAA 337 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 ||||||||||| | ||||| || ||||||||||| | || ||||| | | ||| Sbjct 336 CCGTAGAAACACCGCGCCTCCGTTATCTGCACTTCCTGGCTGAACCGTTCCACGAGATTC 277 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 34031 || || || ||||| || || ||||| || ||||| || || || |||| | Sbjct 276 TCGTTGACGATTCCGTCCGATGCGGCAAAGAAGGCCAACACGTGCGAGATGAAATGCCTC 217 Query 34032 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 34091 || | | | || | ||| | | || || || |||| || || ||||| || Sbjct 216 TCTCCATCTTTGAGGGCCTCCCAGTGAGCCATGTCCTTGGATAGGTCGACCTCTTCTGCT 157 Query 34092 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGG 34151 ||||| ||||| || |||||||| || ||||| |||||||||||| || ||||| ||| Sbjct 156 GTCCAGAATGAGGCTTCTGCCTTCTTGTACATCAGCCAGATGTCATGGTACTGGATAGGG 97 Query 34152 AAAATAACAAA 34162 || || || || Sbjct 96 AAGATCACGAA 86 >seq1055522 Length=411 Score = 122 bits (134), Expect = 1e-22 Identities = 214/309 (69%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||| || | ||||||||||| ||| || || | || || || | ||| || Sbjct 28 GGACAATCGTGCGGACACATCAGACTCCAATCCAGGTTCTTCTCGACGCGCTCCATGAAC 87 Query 63282 AGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 || || |||||||| || || || || || || || | || | |||||| || || || Sbjct 88 AGGTCGGGAATCCAGAGGGCGTAGAACAAG-TCCCTGGCTCGAACTTCCTCCTTGCCCGT 146 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 || || || ||||||||||| | | | || | ||||| ||||||| || || || Sbjct 147 GTTTTTCTTGAGATCGAGGAATTCGAAGACGTCCGCGTGCCAGGGTTCCAGATAGATTGC 206 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | || || || ||||| || || || || | ||| | || ||||| || || || Sbjct 207 GAACGCGCCGGGGCGCTTGTTGCCGCCTTGGTCGACGTAACGTGCTGTGTTGTTGTAGAC 266 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | |||||| |||| |||||||| ||||| || ||||| |||| ||| |||| || | Sbjct 267 GCGCAACATAGGAACTATACCGTTGGATATGCCGTTGGTGCCGGCGATGTAGCTACCCTT 326 Query 63521 GGCACGAAT 63529 |||||| || Sbjct 327 GGCACGGAT 335 >seq1002630 Length=654 Score = 105 bits (116), Expect = 8e-18 Identities = 193/280 (69%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 62592 TATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTT 62650 || |||||||| || || ||| | | || ||||| | || ||| ||||| ||||| || Sbjct 183 TACTGTAGAATCCCCTTGCTGACCGGAC-ATCCTTCGTACGTAGAGTATGGGCCTTCTTT 241 Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710 ||| || |||| || ||||| || || || |||||||| || ||||||||||||| Sbjct 242 CTCGGCGAGTTCGCAGCTCGCTTCCAAAGCGCCGTAATAGATTGTTTCAAAGATCTGGAC 301 Query 62711 ATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC 62770 || || | || ||||| ||| || || |||||| | || || || ||||| Sbjct 302 GTTGAGTTTCTGAGCTTCTTCGCTCTCGAACGGATAACGCATCAGGATGAAGAGATCCGC 361 Query 62771 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62830 | || || | || |||||||| |||| ||| | | | || ||| | | || || || Sbjct 362 GAGACCCTGGATGCCGATACCGATGGGTCGATGACGCATGTTCGAGGTCTTCGCCTCGGG 421 Query 62831 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870 ||| || || | || | || || |||||||| || ||| Sbjct 422 AATCGGGTAGAAGTTGACGTCGATGATTTTATTAAGGTTT 461 >seq1170154 Length=949 Score = 102 bits (112), Expect = 1e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 |||| || |||| | ||||||||||||||| || || || | ||||| | | ||| Sbjct 727 CCCAGCTCGGAAAGAAGTCTATCTGCGACGAACTCGATGTACTGTCGCATCAGTACGCAA 668 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || ||||| ||| ||||| || |||| || || ||||| ||||| ||| Sbjct 667 TTCATGCCGATGAGGGCAACAGGAAGGGCATCAGTTAGGAACTCTTGCTCAATTTTTACA 608 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAAC 33575 |||| | |||||| | || || ||| ||||| |||| ||| || || ||| Sbjct 607 GCATCAATAATAATATTCTTGACCTCGTCCTCAGTCGGTTTCTGTACTAAGTGCTTGAAC 548 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 |||| || || || |||||||| ||||||| Sbjct 547 ATCAGGCACGCAAAGTCGCAGTGAAGACCCT 517 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||| | || || ||||| || ||||| || ||||| || ||||| || | Sbjct 185 CCTCATCTCGAGAGATCAACTCGTTGCTGAATGTGAGGCCAGGCATGAGTCCACGTTTCT 126 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || |||| || || ||||| |||||||| || || ||||||||||| | Sbjct 125 TCAACCAGAAAATGGCGGCAAAACTACCGGAGAAGAAGATACCCTCGACTGCAGCAAATG 66 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 33780 |||| | |||||| ||| | || || || || ||||||| ||||||| |||| Sbjct 65 CAATGATTCTCTCGCCAAAGGATGCACTCTCGTGACAGATCCACTGAAGAGCCCAGTCGG 6 Query 33781 CCTTC 33785 ||||| Sbjct 5 CCTTC 1 >seq277695 Length=258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 62073 TTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCAT 62131 || ||||| || || ||||| ||||| || | ||| |||| ||| || |||| ||||| Sbjct 255 TTGGTACGGAGGTAATACATCCCCGTCTTCAATCCG-GACTGCCACGCGAAAAAGTGCAT 197 Query 62132 ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATC 62191 || ||||| || | || | || || ||||| || | ||||| || || || Sbjct 196 CGAAGTCAGTTTCCCGTAGTTTGGTTTGGCGATGTGGATGTTGAGCGATTGGCTCTGGTC 137 Query 62192 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCA 62248 |||||| ||||||||||| || ||||| || ||||| ||||| || | || ||||| Sbjct 136 GATGAACGCTCCCCTGTCGGCGGCCATCTTGATGATGGTCTTCTGGGAGATCTCCCA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620226477787440