Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1197690 176 6e-39 seq1211838 129 8e-25 seq1055522 116 5e-21 seq277695 93.3 6e-14 >seq1197690 Length=1171 Score = 176 bits (194), Expect = 6e-39 Identities = 441/663 (67%), Gaps = 8/663 (1%) Strand=Plus/Plus Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405 ||||| || || || ||||| || || || |||| | ||| || |||||||| | Sbjct 292 GTATCGTAAATCCCTTCTATGCTGTCGTCTGACATGGCCAATAGGAAGCAGCTAGATAAC 351 Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 || | | ||| | ||| | || | ||| || ||||| || || || || || Sbjct 352 TGAGGTCTTGGAGTAGCAGCACTGAAGAGGGTCGGGGAAGCATGAGTGAAGTATCGCTCC 411 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCG 72525 |||| |||| ||| ||||||||||| || || || || | || || ||||| ||| Sbjct 412 GACAAAAGATCGTAGGTCTCAATAGCGGAATCAATGTCTTCTCCGTGGATGCCTACAGCG 471 Query 72526 ACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAG 72585 |||||||| | ||| ||||| || | ||| |||| || | || || | |||||| Sbjct 472 ACACGCATCAGCATGTGCTGCGGACGTTCGACGACTTTCTGATCAATGCGAAGCAAGTAC 531 Query 72586 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAA 72643 || |||| |||||||| ||||| || ||||| ||||| ||||| ||||| || | Sbjct 532 GAACGCTCCAGCGTTTTAAATCCAAAGTAATTGTAGCTGAAA--TCTCGATCGTAGATTA 589 Query 72644 TAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATA 72702 || | ||||| ||| ||| || || || || | | |||||| | | ||| || Sbjct 590 TAGCGGAATTAAGTCGATCAGCATTCTTTGAAATTACTTGC-TGGTGAAAATCTGAGATC 648 Query 72703 ATCGGAGAATGTTTC-CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 72761 || || | | || | ||| | | | |||| || ||||| ||||| || || Sbjct 649 ATTGGGGTAGCCCTCTTCGTTTCTTTGTTATACAT-CTTATGCAAATCTTCCATAACATC 707 Query 72762 ACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAAT 72821 ||| || ||| ||||| |||||||| | ||||| || || || | || || || || Sbjct 708 ACTGAAAGATTTCTTTGTCTCCTTGTGCAAGTTTGAGACTGCAATACGTGCAGCAAGGAT 767 Query 72822 GGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAA 72881 |||||||| || |||| || || ||||| || |||| ||||||| | | || | Sbjct 768 AGCATAATCAGGGTGTTTAGTGGTCATTGTGGCGGCCGTTTCGGCTGCCAAATTATCAAG 827 Query 72882 TTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGG 72941 || || ||||| || ||| ||| | || | ||| |||||||| | |||| | || Sbjct 828 CTCGACAGTTGTAACGCCAGGATAGAGACCGTTGATTACCTTCATCGTTATTGCAGCCGG 887 Query 72942 ATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATC 73001 || | | ||| |||| | ||||| || | |||| ||| ||||| || || || || Sbjct 888 TTCCAGAAAATCCATGTTGAGACCATAGCAAAGTTTTTGAATTCGAGAGGTTATCTTGTC 947 Query 73002 AAA 73004 || Sbjct 948 GAA 950 >seq1211838 Length=1880 Score = 129 bits (142), Expect = 8e-25 Identities = 215/311 (69%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || ||||| ||||| ||||| ||||| || ||||| | || || || || ||||| || Sbjct 396 TACGTATCTATCAACAGACTGTACATCTCGGAATGCACATTCTCCATAGCAATCTGGAAA 337 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 ||||||||||| | ||||| || | ||| ||||| | || ||||| | | ||| Sbjct 336 CCGTAGAAACACCGCGCCTCCGTTATCTGCACTTCCTGGCTGAACCGTTCCACGAGATTC 277 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 ||||| || |||||||| || ||||| || ||||| || || || |||| | Sbjct 276 TCGTTGACGATTCCGTCCGATGCGGCAAAGAAGGCCAACACGTGCGAGATGAAATGCCTC 217 Query 42515 TCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACC 42574 || | | | | | ||| | | || || || |||| || || |||||| | Sbjct 216 TCTCCATCTTTGAGGGCCTCCCAGTGAGCCATGTCCTTGGATAGGTCGACCTCTTCTGCT 157 Query 42575 GTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGG 42634 ||||| ||||| ||||||||||| || ||||| |||||| ||||| || || || ||| Sbjct 156 GTCCAGAATGAGGCTTCTGCCTTCTTGTACATCAGCCAGATGTCATGGTACTGGATAGGG 97 Query 42635 AAAATAACaaa 42645 || || || || Sbjct 96 AAGATCACGAA 86 >seq1055522 Length=411 Score = 116 bits (128), Expect = 5e-21 Identities = 217/314 (69%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031 || ||||| || | ||||||||||| ||| | |||| || | | || || | || Sbjct 25 CCGGGACAATCGTGCGGACACATCA--GACTCCAATCCAGGTTCTTCTCGACGCGCTCCA 82 Query 72032 TAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTT 72090 | || || || |||||||| || || || || || || |||| || | ||||| || Sbjct 83 TGAACAGGTCGGGAATCCAGAGGGCGTAGAACAAG-TCCCTGGCTCGAACTTCCTCCTTG 141 Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150 || || || || || ||||||||||| | | | || | ||||| ||||||| || Sbjct 142 CCCGTGTTTTTCTTGAGATCGAGGAATTCGAAGACGTCCGCGTGCCAGGGTTCCAGATAG 201 Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210 || || | | || || || ||||| || || || || | ||| | || ||||| || Sbjct 202 ATTGCGAACGCGCCGGGGCGCTTGTTGCCGCCTTGGTCGACGTAACGTGCTGTGTTGTTG 261 Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270 || || | |||||| |||| ||||| |||||| || ||||| |||| ||| ||||| Sbjct 262 TAGACGCGCAACATAGGAACTATACCGTTGGATATGCCGTTGGTGCCGGCGATGTAGCTA 321 Query 72271 CCACTGGCACGAAT 72284 || ||||||| || Sbjct 322 CCCTTGGCACGGAT 335 >seq277695 Length=258 Score = 93.3 bits (102), Expect = 6e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 70825 GCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACT-CCATCCGTAAAAATG 70883 || || ||||| || || ||||| || || || | ||| |||| ||| || |||| || Sbjct 258 GCCTTGGTACGGAGGTAATACATCCCCGTCTTCAATCCG-GACTGCCACGCGAAAAAGTG 200 Query 70884 CATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTG 70943 ||| || ||||| ||| | || | ||| ||||| || || | ||| || || || Sbjct 199 CATCGAAGTCAGTTTCCCGTAGTTTGGTTTGGCGATGTGGATGTTGAGCGATTGGCTCTG 140 Query 70944 ATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 71003 |||||||| ||||||||||| || ||||| || ||||| ||||| || | || ||||| Sbjct 139 GTCGATGAACGCTCCCCTGTCGGCGGCCATCTTGATGATGGTCTTCTGGGAGATCTCCCA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 660918815417480