Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1211838 136 6e-27 seq1055522 118 2e-21 seq1170154 116 5e-21 seq1215792 100 4e-16 seq445917 93.3 6e-14 >seq1211838 Length=1880 Score = 136 bits (150), Expect = 6e-27 Identities = 216/308 (70%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| ||| |||||||| ||| |||||||| ||||| | ||||| || ||| Sbjct 95 TTCCCTATCCAGTACCATGACATCTGGCTGATGTACAAGAAGGCAGAAGCCTCATTCTGG 154 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||||||||||| || ||||||||| || | |||||| | | | | || Sbjct 155 ACAGCAGAAGAGGTCGACCTATCCAAGGACATGGCTCACTGGGAGGCCC---TCAAAGAT 211 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| | | || || |||||| | |||||||||||||||| || || ||||||||| Sbjct 212 GGAGAGAGGCATTTCATCTCGCACGTGTTGGCCTTCTTTGCCGCATCGGACGGAATCGTC 271 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT 125237 ||||| ||||| || ||| ||| || || || || | |||| | ||| || Sbjct 272 AACGAGAATCTCGTGGAACGGTTCAGCCAGGAAGTGCAGATAACGGAGGCGCGGTGTTTC 331 Query 125238 TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGAC 125297 ||||| ||||| || || ||||| ||||| || || |||||| | |||| || Sbjct 332 TACGGTTTCCAGATTGCTATGGAGAATGTGCATTCCGAGATGTACAGTCTGTTGATAGAT 391 Query 125298 ATGTACAT 125305 | |||||| Sbjct 392 ACGTACAT 399 >seq1055522 Length=411 Score = 118 bits (130), Expect = 2e-21 Identities = 175/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 96862 CACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAAC 96921 |||| ||||| || |||||||| || || || ||||| | || |||| |||||| Sbjct 250 CACGTTACGTCGACCAAGGCGGCAACAAGCGCCCCGGCGCGTTCGCAATCTATCTGGAAC 191 Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981 | |||||||||||||| || || || |||| | |||||| | ||| || || | Sbjct 190 CCTGGCACGCGGACGTCTTCGAATTCCTCGATCTCAAGAAAAACACGGGCAAGGAGGAAG 131 Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC- 97040 ||||||||||||||||| || || |||||| | || || |||||||| |||||||| Sbjct 130 TTCGAGCCAGGGACTTGTTCTACGCCCTCTGGATTCCCGACCTGTTCATGGAGCGCGTCG 71 Query 97041 -AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTG 97099 | || ||| | ||||| || ||||| || || | |||||||| |||| || Sbjct 70 AGAAGAACCTGG--ATTGGAGTCTGATGTGTCCGCACGATTGTCCCGGTCTTGCCGACTG 13 Query 97100 CTGGGG 97105 ||||| Sbjct 12 TTGGGG 7 >seq1170154 Length=949 Score = 116 bits (128), Expect = 5e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| ||| ||||||| | |||| | | || | | ||| ||| | Sbjct 2 AAGGCCGACTGGGCTCTTCAGTGGATCTGTCACGAGAGTGCATCCTTTGGCGAGAGAATC 61 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 | ||||| || || || ||||| |||||||| || ||||||||||| ||||| || ||| Sbjct 62 ATTGCATTTGCTGCAGTCGAGGGTATCTTCTTCTCCGGTAGTTTTGCCGCCATTTTCTGG 121 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 | ||||| || ||||||||||| || || || ||| |||||||| || |||||||| Sbjct 122 TTGAAGAAACGTGGACTCATGCCTGGCCTCACATTCAGCAACGAGTTGATCTCTCGAGAT 181 Query 125550 GAGG 125553 |||| Sbjct 182 GAGG 185 >seq1215792 Length=2710 Score = 100 bits (110), Expect = 4e-16 Identities = 212/317 (67%), Gaps = 12/317 (4%) Strand=Plus/Minus Query 127356 AAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAA 127415 ||| ||| | ||||||| ||| |||| ||||| || || || ||||| ||||| Sbjct 2708 AAGCTTGTCGTAGTCGATGAGCCCAGAGACGGGATCGACTTTATAAGGCATCGACTCGAA 2649 Query 127416 AAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCGTGCGTCAGGTGGCC 127463 || | || || ||||| | || ||| ||| |||||||| || || || Sbjct 2648 GAAAATGGAGGTGGCGGAAATCTTCTTGGTCTGCGTGAAGAAGCCGTGCGTAAGATGTCC 2589 Query 127464 TCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACAC 127523 |||||||||| || ||||||||||| | |||||||| | |||| | ||| || Sbjct 2588 ACCGTCGGGCAAGTCCAGTCCCATGATGCGTCCGTGCGGCTCCACGACCGCGGTGAGAAC 2529 Query 127524 GGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCCCATTCGGACTCGTT 127583 |||||||||||| || ||||||||||| || || |||||||| ||| | | Sbjct 2528 GGCAAAGTTGGCGGGAGATCCCGAGTACGGCTGGACGTTGACTCCCCACTCGTCCGGACT 2469 Query 127584 CAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGATGCGATCGATAAACTC 127643 ||| ||| ||||| ||| || |||| | ||| || || ||||| |||| Sbjct 2468 CAATTTGTACGCTTCGAGCGCGCGACGCTGGCACAACAGCTCAATCTCGTCGATGTACTC 2409 Query 127644 GTTACCACCATAGTATC 127660 ||| || || || |||| Sbjct 2408 GTTGCCTCCGTAATATC 2392 >seq445917 Length=313 Score = 93.3 bits (102), Expect = 6e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 127459 TGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTG 127518 || || |||| || ||||||||||||||||||| |||| || || | || ||||| Sbjct 20 TGTCCGCCGTGCGGTAGATCGAGTCCCATGATTCGGTCGTGAGGCTTCATGAGGGCAGTG 79 Query 127519 TACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCCCATTC 127574 ||| |||||||||| ||| |||||||||||| || || || ||||||||| || Sbjct 80 TACGCGGCAAAGTTTGCCGGCGAGCCCGAGTAGGGCTGGACGTTCACTCCCCACTC 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729774044815480