Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq728886 176 2e-39 >seq728886 Length=435 Score = 176 bits (194), Expect = 2e-39 Identities = 258/364 (71%), Gaps = 1/364 (0%) Strand=Plus/Minus Query 50397 ATCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACGCAGCGGCTTAAG 50456 ||||||||||| ||| || || || || || || ||||| ||||| || ||| | || Sbjct 409 ATCCATCACAGCGATCGCGGCTCCCAATACGTCTCTCTGGCGTACACACAACGGTTGAAA 350 Query 50457 GAAGCCGGATTACTGGCATCAACAGGGAGTACTGGCGACTCGTATGACAACGCGATGGCT 50516 || || | | | |||| ||| || || || ||||| || || || || |||| Sbjct 349 GAGGCGGAAGTGATGGCGTCAGTGGGTAGCGTAGGTGACTCATACGATAATGCATTGGCC 290 Query 50517 GAGAGCATCAATGGTCTTTACAAAGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGG 50576 || || ||||| || | |||||||| || || || |||||| | |||||||||||| || Sbjct 289 GAAAGTATCAACGGGTTATACAAAGCAGAAGTGATCCACCGTCAAAGCTGGAAAAACAGG 230 Query 50577 ACAGAAGTGGAACTGGCCACACTAACGTGGGTGGACTGGTATAACAATCGACGATTGCTG 50636 || || || ||||||| | ||||| ||||||| || || || || ||||| Sbjct 229 CAGGATGTTGAGTTGGCCACGTTGGACTGGGTTGACTGGTTCAATAACCGTCGGCTGCTG 170 Query 50637 GAAAGGCTGGGCCATATTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGA 50696 || | | || || | || ||| || ||||||||||| |||||||| || | Sbjct 169 GAGCGTATCGGTTATGTGCCACCGATTGAGGCAGAAAAAGCGTATTATGCATCGGTGAAC 110 Query 50697 AATAATGATCTGGCAGCCTGAGTTCACAGATAAAATACTCTCCAGGAAACCCGGGGCGGT 50756 ||||| | || |||||||||||||| || ||| |||||||| |||| |||||||||| Sbjct 109 AATAAGGTGCT-ACAGCCTGAGTTCACGGACTAAAAACTCTCCAAGAAAACCGGGGCGGT 51 Query 50757 TCAG 50760 |||| Sbjct 50 TCAG 47 Score = 165 bits (182), Expect = 3e-36 Identities = 260/367 (71%), Gaps = 9/367 (2%) Strand=Plus/Minus Query 53238 TCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGG 53297 |||||||||| ||| || || || || || || ||||| |||||||| ||| | || | Sbjct 408 TCCATCACAGCGATCGCGGCTCCCAATACGTCTCTCTGGCGTACACACAACGGTTGAAAG 349 Query 53298 AAGCCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGG 53357 | || | | | |||| ||| || || ||| ||||| || || || || |||| | Sbjct 348 AGGCGGAAGTGATGGCGTCAGTGGGTAGCGTAGGTGACTCATACGATAATGCATTGGCCG 289 Query 53358 AGAGCATCAATGGTCTTTACAAAGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGTG 53417 | || ||||| || | |||||||| || || || |||||| | |||||||||||| | | Sbjct 288 AAAGTATCAACGGGTTATACAAAGCAGAAGTGATCCACCGTCAAAGCTGGAAAAACAG-G 230 Query 53418 CA-GAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACAATCGACGATTGCTG 53476 || || || || ||||||| | ||||| ||||||| || || || || ||||| Sbjct 229 CAGGATGTTGAGTTGGCCACGTTGGACTGGGTTGACTGGTTCAATAACCGTCGGCTGCTG 170 Query 53477 GAAAGGCTGGGCCACACTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGG- 53535 || | | || | || ||| || ||||||||||| ||||||| |||||| Sbjct 169 GAGCGTATCGGTTATGTGCCACCGATTGAGGCAGAAAAAGCGTATTATG----CATCGGT 114 Query 53536 AAACGATGATCTG--GCAGCCTGAGTTCACAGATAAAACACTCTCCAGGAAACCCGGGAC 53593 ||| || | || |||||||||||||| || ||| |||||||| |||| ||||| | Sbjct 113 GAACAATAAGGTGCTACAGCCTGAGTTCACGGACTAAAAACTCTCCAAGAAAACCGGGGC 54 Query 53594 GGTTCAG 53600 ||||||| Sbjct 53 GGTTCAG 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182574326100392