Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1030155 131 4e-25 seq985049 120 7e-22 seq1211838 104 5e-17 seq1101710 100 6e-16 >seq1030155 Length=683 Score = 131 bits (144), Expect = 4e-25 Identities = 133/171 (78%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || || || ||||||| ||||||||| |||||||| || Sbjct 507 GTAGACTCCTTCTGAATGTTGTAATCGGAGAGAGTTCGACCGTCTTCAAGTTGTTTGCCG 566 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || ||||||||||| || || || |||||||| || || |||||||| ||||| Sbjct 567 GCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCTTTC 626 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACC 104532 ||||| || | ||| || | ||| || || || || || || ||||| || Sbjct 627 ACATTCTCAATGGTGTC-CGAGGCCTCAACTTCAAGAGTGATGGTCTTTCC 676 >seq985049 Length=630 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| ||||| || || || || ||||| || | || | || ||||| | || || || Sbjct 375 TGTTGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCCAACTGCTTACC 434 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||| || || | | |||||| || || || || || ||||| || || ||||| || || Sbjct 435 AGCGAAGATCAAACGCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTCGCCTT 494 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | |||||| || |||||| ||||| ||||| || ||||| || || || Sbjct 495 GACATTCTCGATAGTATCGGAAGCTTCTACTTCTAGGGTAATGGTTTTACCCGTGAGGGT 554 Query 104542 TTTTACAAATATCTGCATTTT 104562 ||| || || ||||||||||| Sbjct 555 TTTCACGAAAATCTGCATTTT 575 >seq1211838 Length=1880 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 || || ||||| ||||| ||||| || || |||| | || || || ||||| | || Sbjct 260 GACGGAATCGTCAACGAGAATCTCGTGGAACGGTTCAGCCAGGAAGTGCAGATAACGGAG 319 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | ||||| ||||| |||||||| ||||| || ||| | ||||| |||||||||||| Sbjct 320 GCGCGGTGTTTCTACGGTTTCCAGATTGCTATGGAGAATGTGCATTCCGAGATGTACAGT 379 Query 268997 CTATTAATAGATACTTATAT 269016 || || |||||||| || || Sbjct 380 CTGTTGATAGATACGTACAT 399 >seq1101710 Length=836 Score = 100 bits (110), Expect = 6e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||||||||| || ||| || || ||||| | || || ||||| || ||||| || | Sbjct 460 TCCCCCTCTGAGTACAAGAACAAGGTGTAACATTGACTCCTTCTGTATGTTATAATCTAA 401 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||| ||||| || ||||||||||| | |||||||||||||| || Sbjct 400 AAGTGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATAAATCTCTGTTGATCAGGTGG 341 Query 104452 TATTCCTTCTTTATCCTG 104469 ||||||||||| || || Sbjct 340 AATTCCTTCTTTCTCTTG 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1133426080968284