Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24]
1,218,273 sequences; 509,522,935 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1030155 131 4e-25
seq985049 120 7e-22
seq1211838 104 5e-17
seq1101710 100 6e-16
>seq1030155
Length=683
Score = 131 bits (144), Expect = 4e-25
Identities = 133/171 (78%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || |||||||| || || || || ||||||| ||||||||| |||||||| ||
Sbjct 507 GTAGACTCCTTCTGAATGTTGTAATCGGAGAGAGTTCGACCGTCTTCAAGTTGTTTGCCG 566
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || ||||||||||| || || || |||||||| || || |||||||| |||||
Sbjct 567 GCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCTTTC 626
Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACC 104532
||||| || | ||| || | ||| || || || || || || ||||| ||
Sbjct 627 ACATTCTCAATGGTGTC-CGAGGCCTCAACTTCAAGAGTGATGGTCTTTCC 676
>seq985049
Length=630
Score = 120 bits (132), Expect = 7e-22
Identities = 147/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421
||| ||||| || || || || ||||| || | || | || ||||| | || || ||
Sbjct 375 TGTTGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCCAACTGCTTACC 434
Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481
||| || || | | |||||| || || || || || ||||| || || ||||| || ||
Sbjct 435 AGCGAAGATCAAACGCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTCGCCTT 494
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | |||||| || |||||| ||||| ||||| || ||||| || || ||
Sbjct 495 GACATTCTCGATAGTATCGGAAGCTTCTACTTCTAGGGTAATGGTTTTACCCGTGAGGGT 554
Query 104542 TTTTACAAATATCTGCATTTT 104562
||| || || |||||||||||
Sbjct 555 TTTCACGAAAATCTGCATTTT 575
>seq1211838
Length=1880
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936
|| || ||||| ||||| ||||| || || |||| | || || || ||||| | ||
Sbjct 260 GACGGAATCGTCAACGAGAATCTCGTGGAACGGTTCAGCCAGGAAGTGCAGATAACGGAG 319
Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996
|| | ||||| ||||| |||||||| ||||| || ||| | ||||| ||||||||||||
Sbjct 320 GCGCGGTGTTTCTACGGTTTCCAGATTGCTATGGAGAATGTGCATTCCGAGATGTACAGT 379
Query 268997 CTATTAATAGATACTTATAT 269016
|| || |||||||| || ||
Sbjct 380 CTGTTGATAGATACGTACAT 399
>seq1101710
Length=836
Score = 100 bits (110), Expect = 6e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391
||||||||| || ||| || || ||||| | || || ||||| || ||||| || |
Sbjct 460 TCCCCCTCTGAGTACAAGAACAAGGTGTAACATTGACTCCTTCTGTATGTTATAATCTAA 401
Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451
|| || | || ||||| ||||| || ||||||||||| | |||||||||||||| ||
Sbjct 400 AAGTGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATAAATCTCTGTTGATCAGGTGG 341
Query 104452 TATTCCTTCTTTATCCTG 104469
||||||||||| || ||
Sbjct 340 AATTCCTTCTTTCTCTTG 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1133426080968284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |