Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1197690 179 5e-40 seq1211838 138 1e-27 seq1055522 132 6e-26 seq1170154 89.7 6e-13 seq277695 87.8 2e-12 >seq1197690 Length=1171 Score = 179 bits (198), Expect = 5e-40 Identities = 462/694 (67%), Gaps = 10/694 (1%) Strand=Plus/Plus Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 || || || || || |||||||| || || |||| | ||| || |||||||| | Sbjct 292 GTATCGTAAATCCCTTCTATGCTGTCGTCTGACATGGCCAATAGGAAGCAGCTAGATAAC 351 Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 || | | ||| | ||| | || | ||| || ||||| || || || || || Sbjct 352 TGAGGTCTTGGAGTAGCAGCACTGAAGAGGGTCGGGGAAGCATGAGTGAAGTATCGCTCC 411 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63719 || | |||| ||| ||||||||||| || || || || | || || ||||| ||| Sbjct 412 GACAAAAGATCGTAGGTCTCAATAGCGGAATCAATGTCTTCTCCGTGGATGCCTACAGCG 471 Query 63720 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA-CAAGTA 63778 |||||||| | ||||||||| || | ||| |||| ||| || | | | || |||||| Sbjct 472 ACACGCATCAGCATGTGCTGCGGACGTTCGACGA-CTTTCTGATCAATGCGAAGCAAGTA 530 Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATA 63836 || |||| |||||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 531 CGAACGCTCCAGCGTTTTAAATCCAAAGTAATTGTAGCTGAAA--TCTCGATCGTAGATT 588 Query 63837 ATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAAT 63895 ||| | || || ||| ||| || || || || | | |||||| | | ||| || Sbjct 589 ATAGCGGAATTAAGTCGATCAGCATTCTTTGAAATTACTTGC-TGGTGAAAATCTGAGAT 647 Query 63896 AATCGGAGAATGTTTCC-CATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTT 63954 || || | | || | ||| | | | |||| || ||||| ||||| || | Sbjct 648 CATTGGGGTAGCCCTCTTCGTTTCTTTGTTATACATC-TTATGCAAATCTTCCATAACAT 706 Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || ||| ||||| |||||||| | ||||| || || || | || || || | Sbjct 707 CACTGAAAGATTTCTTTGTCTCCTTGTGCAAGTTTGAGACTGCAATACGTGCAGCAAGGA 766 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | |||||||| || |||| || || ||||| || |||||||||||| | | || | Sbjct 767 TAGCATAATCAGGGTGTTTAGTGGTCATTGTGGCGGCCGTTTCGGCTGCCAAATTATCAA 826 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAG 64134 || || ||||| || ||| ||| | || | || |||||||| | |||| | | Sbjct 827 GCTCGACAGTTGTAACGCCAGGATAGAGACCGTTGATTACCTTCATCGTTATTGCAGCCG 886 Query 64135 GATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTAT 64194 | || | | |||| |||| | ||||| || | |||| ||| ||||| || || || | Sbjct 887 GTTCCAGAAAATCCATGTTGAGACCATAGCAAAGTTTTTGAATTCGAGAGGTTATCTTGT 946 Query 64195 CAAACATGACATTTTCCTTGTATCCATTTCGTTT 64228 | || ||| | ||| || ||||| ||||| Sbjct 947 CGAAATGGACCTCTTCTTTACGTCCATCGCGTTT 980 >seq1211838 Length=1880 Score = 138 bits (152), Expect = 1e-27 Identities = 217/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || ||||| ||||| ||||| ||||| || ||||| | || || || || ||||| || Sbjct 396 TACGTATCTATCAACAGACTGTACATCTCGGAATGCACATTCTCCATAGCAATCTGGAAA 337 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 ||||||||||| | ||||| || ||||| ||||| | || |||||| | | ||| Sbjct 336 CCGTAGAAACACCGCGCCTCCGTTATCTGCACTTCCTGGCTGAACCGTTCCACGAGATTC 277 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33753 || || || |||||||| || ||||| || ||||| || || || |||| | Sbjct 276 TCGTTGACGATTCCGTCCGATGCGGCAAAGAAGGCCAACACGTGCGAGATGAAATGCCTC 217 Query 33754 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 33813 || | | | || | ||| | | || || || |||| || || ||||| || Sbjct 216 TCTCCATCTTTGAGGGCCTCCCAGTGAGCCATGTCCTTGGATAGGTCGACCTCTTCTGCT 157 Query 33814 GTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGG 33873 ||||| ||||| || |||||||| || ||||| ||||||||||| || ||||| ||| Sbjct 156 GTCCAGAATGAGGCTTCTGCCTTCTTGTACATCAGCCAGATGTCATGGTACTGGATAGGG 97 Query 33874 AAAATAACAAA 33884 || || || || Sbjct 96 AAGATCACGAA 86 >seq1055522 Length=411 Score = 132 bits (146), Expect = 6e-26 Identities = 218/312 (70%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 || ||||| || | ||||||||||| ||| || || | || || || | ||| Sbjct 25 CCGGGACAATCGTGCGGACACATCAGACTCCAATCCAGGTTCTTCTCGACGCGCTCCATG 84 Query 63228 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 || || || |||||||| || || || || || || |||| || | |||||| || || Sbjct 85 AACAGGTCGGGAATCCAGAGGGCGTAGAACAAG-TCCCTGGCTCGAACTTCCTCCTTGCC 143 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 || || || || ||||||||||| | | | || | ||||| ||||||| || || Sbjct 144 CGTGTTTTTCTTGAGATCGAGGAATTCGAAGACGTCCGCGTGCCAGGGTTCCAGATAGAT 203 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 || | | || || || ||||| || || || || | ||| | || ||||| || || Sbjct 204 TGCGAACGCGCCGGGGCGCTTGTTGCCGCCTTGGTCGACGTAACGTGCTGTGTTGTTGTA 263 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 || | |||||| |||| |||||||| ||||| || ||||| |||| ||| ||||| || Sbjct 264 GACGCGCAACATAGGAACTATACCGTTGGATATGCCGTTGGTGCCGGCGATGTAGCTACC 323 Query 63467 ACTGGCACGAAT 63478 ||||||| || Sbjct 324 CTTGGCACGGAT 335 >seq1170154 Length=949 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/165 (72%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 |||||| || ||||| || ||||| || ||||| || || | ||| || |||| || Sbjct 165 TCGTTGCTGAATGTGAGGCCAGGCATGAGTCCACGTTTCTTCAACCAGAAAATGGCGGCA 106 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465 || || || |||||||| || || ||||||||||| ||||| | |||||| ||| | Sbjct 105 AAACTACCGGAGAAGAAGATACCCTCGACTGCAGCAAATGCAATGATTCTCTCGCCAAAG 46 Query 33466 CCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTC 33507 || || || || ||||||| ||||||| ||||||||| Sbjct 45 GATGCACTCTCGTGACAGATCCACTGAAGAGCCCAGTCGGCCTTC 1 >seq277695 Length=258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 62022 TTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCAT 62080 || ||||| || || ||||| ||||| || | ||| |||| ||| || |||| ||||| Sbjct 255 TTGGTACGGAGGTAATACATCCCCGTCTTCAATCCG-GACTGCCACGCGAAAAAGTGCAT 197 Query 62081 ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATC 62140 || ||||| || | || | || || ||||| || | ||||| || || || Sbjct 196 CGAAGTCAGTTTCCCGTAGTTTGGTTTGGCGATGTGGATGTTGAGCGATTGGCTCTGGTC 137 Query 62141 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 62197 |||||| ||||||||||| || ||||| || ||||| ||||| || | || ||||| Sbjct 136 GATGAACGCTCCCCTGTCGGCGGCCATCTTGATGATGGTCTTCTGGGAGATCTCCCA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613460703072680