Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq116470 251 9e-62 seq1197690 174 2e-38 seq1055522 125 9e-24 seq1170154 82.4 1e-10 seq277695 82.4 1e-10 >seq116470 Length=220 Score = 251 bits (278), Expect = 9e-62 Identities = 194/227 (85%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 33452 GAGCCAGCGCTTGTCCGAGGACCTCTCCGTGGTCATGTGGCCGGCATGACTAGACAC--- 33508 ||||||||||| |||||| ||| |||||||||||||||||||||||||||||| | Sbjct 1 GAGCCAGCGCT-GTCCGAAGACGCTTCCGTGGTCATGTGGCCGGCATGACTAGACGCTTT 59 Query 33509 CAAAGGCGCACGGAACGCTGTTACCTTCCCACCGTAGTGGTCCCTATTTTTCTACTTGCA 33568 || |||||||| ||||||||||||||||||| |||||| ||||||| |||||||||| Sbjct 60 CA----CGCACGGAGCGCTGTTACCTTCCCACCGAAGTGGTTCCTATTTATCTACTTGCA 115 Query 33569 TTTTTACATGCTTTCGAACTGCTAGGTTGGTAGAAGCTGGGACGAGTAACAGGAGCTCAC 33628 ||| |||||||||||||||||||||||| || ||||||| | ||||| ||||||||| Sbjct 116 TTTG--CATGCTTTCGAACTGCTAGGTTGGCAGGAGCTGGGGCAAGTAATGGGAGCTCAC 173 Query 33629 TCTGTTACGCAGCACTCGGGATTTGAACCGCCAAACTGCCGACCTTC 33675 || |||||||||||| |||||| |||| || |||||||||||||| Sbjct 174 TCCATTACGCAGCACTAGGGATTCGAACTGCTGAACTGCCGACCTTC 220 >seq1197690 Length=1171 Score = 174 bits (192), Expect = 2e-38 Identities = 461/694 (66%), Gaps = 10/694 (1%) Strand=Plus/Plus Query 63395 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 63454 ||||| || || || ||||| || || || |||| | ||| || |||||||| | Sbjct 292 GTATCGTAAATCCCTTCTATGCTGTCGTCTGACATGGCCAATAGGAAGCAGCTAGATAAC 351 Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514 || | | ||| | ||| | || | ||| || ||||| ||||| || || || Sbjct 352 TGAGGTCTTGGAGTAGCAGCACTGAAGAGGGTCGGGGAAGCATGAGTGAAGTATCGCTCC 411 Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63574 || | |||| ||| ||||||||||| || || || || | || || ||||| ||| Sbjct 412 GACAAAAGATCGTAGGTCTCAATAGCGGAATCAATGTCTTCTCCGTGGATGCCTACAGCG 471 Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA-CAAGTA 63633 |||||||| | ||||||||| || | ||| |||| ||| || | | | || |||||| Sbjct 472 ACACGCATCAGCATGTGCTGCGGACGTTCGACGA-CTTTCTGATCAATGCGAAGCAAGTA 530 Query 63634 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATA 63691 || |||| |||||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 531 CGAACGCTCCAGCGTTTTAAATCCAAAGTAATTGTAGCTGAAA--TCTCGATCGTAGATT 588 Query 63692 ATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT-AATACTTGAAAT 63750 ||| | || || ||| ||| || || || ||| | | |||| || | ||| || Sbjct 589 ATAGCGGAATTAAGTCGATCAGCATTCTTTGAAATTACTTGC-TGGTGAAAATCTGAGAT 647 Query 63751 AATAGGAAAATGTTTC-CCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTT 63809 || || | || | ||| | | | |||| || ||||| ||||| || | Sbjct 648 CATTGGGGTAGCCCTCTTCGTTTCTTTGTTATACAT-CTTATGCAAATCTTCCATAACAT 706 Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || ||| ||||| || ||||| | ||||| || || || | || || || | Sbjct 707 CACTGAAAGATTTCTTTGTCTCCTTGTGCAAGTTTGAGACTGCAATACGTGCAGCAAGGA 766 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | |||||||| || |||| || || ||||| || |||||||||||| | | || | Sbjct 767 TAGCATAATCAGGGTGTTTAGTGGTCATTGTGGCGGCCGTTTCGGCTGCCAAATTATCAA 826 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAG 63989 || || ||||| || ||| ||| | || | ||| |||||||| | |||| | | Sbjct 827 GCTCGACAGTTGTAACGCCAGGATAGAGACCGTTGATTACCTTCATCGTTATTGCAGCCG 886 Query 63990 GATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTAT 64049 | || | | ||| |||| | ||||| || | |||| ||| ||||| || || || | Sbjct 887 GTTCCAGAAAATCCATGTTGAGACCATAGCAAAGTTTTTGAATTCGAGAGGTTATCTTGT 946 Query 64050 CAAACATGACATTTTCCTTGTATCCATTTCGTTT 64083 | || ||| | ||| || ||||| ||||| Sbjct 947 CGAAATGGACCTCTTCTTTACGTCCATCGCGTTT 980 >seq1055522 Length=411 Score = 125 bits (138), Expect = 9e-24 Identities = 228/331 (69%), Gaps = 2/331 (1%) Strand=Plus/Plus Query 63004 TCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63063 ||||||| | | | || || ||||| || | ||||||||||| ||| || || Sbjct 6 TCCCCAACAGTCGGCAAGACCGGGACAATCGTGCGGACACATCAGACTCCAATCCAGGTT 65 Query 63064 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGG 63122 | || || || | ||| || || || |||||||| || || || || || || |||| Sbjct 66 CTTCTCGACGCGCTCCATGAACAGGTCGGGAATCCAGAGGGCGTAGAACAAG-TCCCTGG 124 Query 63123 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63182 || | |||||| || || || || || || ||||||||||| | | | || | | Sbjct 125 CTCGAACTTCCTCCTTGCCCGTGTTTTTCTTGAGATCGAGGAATTCGAAGACGTCCGCGT 184 Query 63183 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63242 |||| ||||||| || || || | | || || || ||||| || || || || | || Sbjct 185 GCCAGGGTTCCAGATAGATTGCGAACGCGCCGGGGCGCTTGTTGCCGCCTTGGTCGACGT 244 Query 63243 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 63302 | | || ||||| || || || | |||||| |||| ||||| |||||| | || |||| Sbjct 245 AACGTGCTGTGTTGTTGTAGACGCGCAACATAGGAACTATACCGTTGGATATGCCGTTGG 304 Query 63303 TCCCTGAGATATAGCTTCCACTGGCACGAAT 63333 | || | ||| ||||| || ||||||| || Sbjct 305 TGCCGGCGATGTAGCTACCCTTGGCACGGAT 335 >seq1170154 Length=949 Score = 82.4 bits (90), Expect = 1e-10 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 |||| || |||| | |||||||||||| || || || || | ||||| | | ||| Sbjct 727 CCCAGCTCGGAAAGAAGTCTATCTGCGACGAACTCGATGTACTGTCGCATCAGTACGCAA 668 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || || ||| ||||| || |||| || || ||||| ||||| || Sbjct 667 TTCATGCCGATGAGGGCAACAGGAAGGGCATCAGTTAGGAACTCTTGCTCAATTTTTACA 608 Query 32595 GCGTCTGTTATAATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 32653 || || | |||||| |||| || || ||| ||||| | | ||| || || || Sbjct 607 GCATCAATAATAATA-TTCTTGACCTCGTCCTCAGTCGGTTTCTGTACTAAGTGCTTGAA 549 Query 32654 CATCAAACATGCGAAATCGCAGTGTAGACCCT 32685 ||||| || || || |||||||| ||||||| Sbjct 548 CATCAGGCACGCAAAGTCGCAGTGAAGACCCT 517 >seq277695 Length=258 Score = 82.4 bits (90), Expect = 1e-10 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 61877 TTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCAT 61935 || ||||| || || ||||| ||||| || | ||| |||| ||| || |||| ||||| Sbjct 255 TTGGTACGGAGGTAATACATCCCCGTCTTCAATCCG-GACTGCCACGCGAAAAAGTGCAT 197 Query 61936 ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATC 61995 || ||||| || | || | || || ||||| || | ||||| || || || Sbjct 196 CGAAGTCAGTTTCCCGTAGTTTGGTTTGGCGATGTGGATGTTGAGCGATTGGCTCTGGTC 137 Query 61996 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCA 62052 |||||| ||||||||||| || ||||| || || || ||||| || | || ||||| Sbjct 136 GATGAACGCTCCCCTGTCGGCGGCCATCTTGATGATGGTCTTCTGGGAGATCTCCCA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 623982790530800