Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1211838 188 8e-43 seq347939 122 1e-22 seq1170154 95.1 1e-14 seq421169 87.8 2e-12 >seq1211838 Length=1880 Score = 188 bits (208), Expect = 8e-43 Identities = 232/317 (73%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| || |||||| ||||| || ||||| ||||||||||| ||||| ||| Sbjct 399 ATGTACGTATCTATCAACAGACTGTACATCTCGGAATGCACATTCTCCATAGCAATCTGG 340 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || ||||||||||| | || ||||| ||||||||||| || || | || |||||| Sbjct 339 AAACCGTAGAAACACCGCGCCTCCGTTATCTGCACTTCCTGGCTGAACCGTTCCACGAGA 280 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || ||||| || || || ||||| ||||| || ||||| | ||| || ||||| Sbjct 279 TTCTCGTTGACGATTCCGTCCGATGCGGCAAAGAAGGCCAACACGTGCGAGATGAAATGC 220 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCG 93601 |||| ||||||| || ||||| | | | || || || || ||||| ||||| Sbjct 219 CTCTCTCCATCTTTGAGGGCCTCCCAGTGAGCCATGTCCTTGGATAGGTCGACCTCTTCT 160 Query 93602 ACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATT 93661 | ||||| || || |||||||| || |||||||| ||| ||||| || || || || Sbjct 159 GCTGTCCAGAATGAGGCTTCTGCCTTCTTGTACATCAGCCAGATGTCATGGTACTGGATA 100 Query 93662 GGAAATATGACAAAACG 93678 || || || || || || Sbjct 99 GGGAAGATCACGAAGCG 83 >seq347939 Length=280 Score = 122 bits (134), Expect = 1e-22 Identities = 80/87 (92%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGC 126322 ||| |||||||||||||||||||||||||||||| ||||| |||||| ||||| ||| || Sbjct 57 CAGCCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTACCCTCTGGGTGC 116 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 117 GTGGGTTCGAACCCCACACCTGGCAAA 143 >seq1170154 Length=949 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || ||||| || |||||||| ||||||||||| | || || | ||||| |||||||| Sbjct 183 TCATCTCGAGAGATCAACTCGTTGCTGAATGTGAGGCCAGGCATGAGTCCACGTTTCTTC 124 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| || || | ||||||||||| || || || ||||| || || || |||||||| Sbjct 123 AACCAGAAAATGGCGGCAAAACTACCGGAGAAGAAGATACCCTCGACTGCAGCAAATGCA 64 Query 93236 ACAATACGTTCGGCAAA 93252 | || | ||| |||| Sbjct 63 ATGATTCTCTCGCCAAA 47 >seq421169 Length=305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/96 (82%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 162734 ATaaaaaaaTCAGAATTA--CCTCTTGTGAGAATCGAACTCACGACAACCGGCGTATAAG 162791 ||||||||| | |||| |||||||||||||||||||||||||| | || || ||| Sbjct 166 ATAAAAAAA--AAAATTCTGCCTCTTGTGAGAATCGAACTCACGACCCCTGGTTTACAAG 109 Query 162792 ACCGATGCTCTAACCACTGAGCTAAAGAGGCTACAT 162827 ||| |||||| || |||||||||||||||||||| Sbjct 108 ACCAGTGCTCT-GCCTCTGAGCTAAAGAGGCTACAT 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548380694032520