Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq959355 102 6e-16 seq1101710 100 2e-15 seq979815 98.7 8e-15 seq424058 95.1 1e-13 seq1030155 87.8 1e-11 >seq959355 Length=592 Score = 102 bits (112), Expect = 6e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 |||||||| || | ||||| || || ||||| |||| | | ||||||||||||||| Sbjct 132 CCATAAGCCAAGGCTGCAGCGGTGGGCTCGTTGATTACTCGTAAAACATTGAGTCCCGCA 73 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 || | | |||||| ||||| |||||||||| ||| || ||||||||||||||||| Sbjct 72 ATCTGTCCGGCATCTTTTGTGGCCTGACGTTGTGAATCGTTGAAATATGCAGGAACAGTG 13 Query 361826 ATCACTGCTTT 361836 | ||| || || Sbjct 12 ACCACAGCATT 2 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || |||||||| || || ||||||||||| || || ||||||| Sbjct 3 ATGCTGTGGTCACTGTTCCTGCATATTTCAACGATTCACAACGTCAGGCCACAAAAGATG 62 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | |||| ||||| ||||| |||||| | || | ||||| || || || ||||| || Sbjct 63 CCGGACAGATTGCGGGACTCAATGTTTTACGAGTAATCAACGAGCCCACCGCTGCAGCCT 122 Query 550518 TTGCATATGGACTTGATAAA 550537 | || |||||| | || ||| Sbjct 123 TGGCTTATGGAATGGACAAA 142 >seq1101710 Length=836 Score = 100 bits (110), Expect = 2e-15 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||||||||| || || |||||||||| ||| || |||||||| |||||||||||||| Sbjct 388 ATCTTCAAGTTGCTTACCAGCAAAAATAAATCTCTGTTGATCAGGTGGAATTCCTTCTTT 329 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGT--ATCAGTGTGAGTACATTCGAGAGTA 563436 ||||| | | || |||| ||| ||||| || | || |||| || | Sbjct 328 CTCTTGCACTAGTTCCTTTATGTACTCTATTGTTGATGAAGGT--TCACATGTAAGTGGG 271 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||||||||| ||||| || | ||||||| |||| Sbjct 270 ACCGTTTTACCAGTCAGAGTCTTGAAGAAAATTCGCAT 233 >seq979815 Length=627 Score = 98.7 bits (108), Expect = 8e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || || || |||||||||||| ||||||||| || | |||||||| ||||| ||| Sbjct 55 GGCATTGACTTGGGAACCACATATTCTTGTGTTGGCGTCTTTCAAAATGGCAAAGTGGAA 114 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||||||||| || ||||| || | || || ||| || || | |||||||| | Sbjct 115 ATTATTGCCAACGACCAAGGGAATCGTACAACACCAAGCTACGTGGCATTCACGGATAAC 174 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| || |||| || ||||| || | || | || || || || ||||| || Sbjct 175 GAACGATTGATTGGGGAAGCAGCCCAAAACCAGGTGGCTATGAACCCAACAAATACAATC 234 Query 550178 TTTG 550181 |||| Sbjct 235 TTTG 238 >seq424058 Length=304 Score = 95.1 bits (104), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || |||||||| || || ||||||||||| || || ||||| | Sbjct 3 ATGCTGTGGTCACTGTTCCTGCATATTTCAACGATTCACAACGTCAGGCCACAAAAGACG 62 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | |||| ||||| || || |||||| | || ||||||| || || || ||||| || Sbjct 63 CCGGACAGATTGCGGGCCTCAATGTTTTACGAGTTATCAACGAGCCCACCGCTGCAGCCT 122 Query 550518 TTGCATATGGACTTGATAAA 550537 | || |||||| | || ||| Sbjct 123 TGGCTTATGGAATGGACAAA 142 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 |||||||| || | ||||| || || ||||| || | | | ||||||||| ||||| Sbjct 132 CCATAAGCCAAGGCTGCAGCGGTGGGCTCGTTGATAACTCGTAAAACATTGAGGCCCGCA 73 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 || | | || ||| ||||| |||||||||| ||| || ||||||||||||||||| Sbjct 72 ATCTGTCCGGCGTCTTTTGTGGCCTGACGTTGTGAATCGTTGAAATATGCAGGAACAGTG 13 Query 361826 ATCACTGCTTT 361836 | ||| || || Sbjct 12 ACCACAGCATT 2 >seq1030155 Length=683 Score = 87.8 bits (96), Expect = 1e-11 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||||||| || || ||| |||||||| | ||||||| ||||||| Sbjct 497 CAAG-TGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAGAGAGTTCGACCGTCTTCAA 555 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 ||||||| ||||| || || || || || || || || ||||||||||| || ||||||| Sbjct 556 GTTGTTTGCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGAA 615 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATC 563414 | || ||| || |||||| || || Sbjct 616 TCTTGGCTTTCACATTCTCAATGGTGTC 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3964868229348770