Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq979815 116 3e-20 seq959355 105 5e-17 seq424058 105 5e-17 >seq979815 Length=627 Score = 116 bits (128), Expect = 3e-20 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| || ||||| ||||| || | || | || | || |||||| || ||||||| Sbjct 238 CAAAGATTGTATTTGTTGGGTTCATAGCCACCTGGTTTTGGGCTGCTTCCCCAATCAATC 179 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 |||| | || || |||| || || ||| ||||| ||||| ||||| || || |||| Sbjct 178 GTTCGTTATCCGTGAATGCCACGTAGCTTGGTGTTGTACGATTCCCTTGGTCGTTGGCAA 119 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 ||||||| ||||| |||||||| | || || |||||| | | || ||||| || |||| Sbjct 118 TAATTTCCACTTTGCCATTTTGAAAGACGCCAACACAAGAATATGTGGTTCCCAAGTCAA 59 Query 282870 TACCAATAGCAATTTTATC 282888 | |||| ||| | ||||| Sbjct 58 TGCCAACGGCAGTCTTATC 40 >seq959355 Length=592 Score = 105 bits (116), Expect = 5e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 |||| || | ||||| || || || ||||| || || || || || | || ||||||| Sbjct 143 TTTTGTCCATTCCATAAGCCAAGGCTGCAGCGGTGGGCTCGTTGATTACTCGTAAAACAT 84 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | || || ||||| ||| |||||||| ||||| || | |||||||||||| ||||||| Sbjct 83 TGAGTCCCGCAATCTGTCCGGCATCTTTTGTGGCCTGACGTTGTGAATCGTTGAAATATG 24 Query 282453 CAGGAACAGTAATAACGGCAT 282473 |||||||||| | || |||| Sbjct 23 CAGGAACAGTGACCACAGCAT 3 >seq424058 Length=304 Score = 105 bits (116), Expect = 5e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 |||| || | ||||| || || || ||||| || || || || |||| || ||||||| Sbjct 143 TTTTGTCCATTCCATAAGCCAAGGCTGCAGCGGTGGGCTCGTTGATAACTCGTAAAACAT 84 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | || || ||||| ||| || ||||| ||||| || | |||||||||||| ||||||| Sbjct 83 TGAGGCCCGCAATCTGTCCGGCGTCTTTTGTGGCCTGACGTTGTGAATCGTTGAAATATG 24 Query 282453 CAGGAACAGTAATAACGGCAT 282473 |||||||||| | || |||| Sbjct 23 CAGGAACAGTGACCACAGCAT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3680818344121698