Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Isoperla_20grammatica_20[genbank_20GCA_5F001676475.1_202016-06-24] 1,218,273 sequences; 509,522,935 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq985049 107 1e-18 seq1030155 100 2e-16 seq1101710 86.0 4e-12 >seq985049 Length=630 Score = 107 bits (118), Expect = 1e-18 Identities = 168/237 (71%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | |||||||| ||||| ||||| || |||||||| ||||| || || | Sbjct 344 CGCCACCACGAAGACGCAGGACCAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAGTCGG 403 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || | ||||| | || ||||| || || || |||||||||||||| || | Sbjct 404 ACAAGGTACGGCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGGTCTGGTG 463 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCT 34652 | | ||||| |||||| |||||| ||| || ||||| || | ||| Sbjct 464 GGATGCCCTCTTTGTCTTGGATCTTCGCCTTGACATTCTCGATAGTATCG----GAAGCT 519 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || ||||| | ||| || |||||||| || | |||||||| ||||||||||| || Sbjct 520 -TCTACTTCTAGGGTAATGGTTTTACCCGTGAGGGTTTTCACGAAAATCTGCATTTT 575 >seq1030155 Length=683 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || |||||| |||||||| ||||| || || ||||| |||||||| Sbjct 495 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAGAGAGTTCGACCGTCTTCA 554 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| ||||| || || | | ||||||||| || || | ||| ||||||||| Sbjct 555 AGTTGTTTGCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGA 614 Query 34618 ATCTT 34622 ||||| Sbjct 615 ATCTT 619 >seq1101710 Length=836 Score = 86.0 bits (94), Expect = 4e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || |||||||||||| ||||||| || | ||||||||||| ||||| ||||| Sbjct 424 CTCCTTCTGTATGTTATAATCTAAAAGTGTACGGCCATCTTCAAGTTGCTTACCAGCAAA 365 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || || | |||||| || || || | ||| || || ||| Sbjct 364 AATAAATCTCTGTTGATCAGGTGGAATTCCTTCTTTCTCT 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 310056588629609