Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq55823 118 1e-21 seq116231 116 4e-21 >seq55823 Length=3224 Score = 118 bits (130), Expect = 1e-21 Identities = 114/144 (79%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 145679 GCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGT 145738 |||| | || |||||||||||||| |||| ||| |||||||||||| || | |||| Sbjct 1957 GCTTGACGGCGTCCACGTGGTTGAGATAGATGTGGGCGTCCCCCAGGGTATGTACAAAGT 1898 Query 145739 CCCCGGGCTCGAGGCCC-GTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCT 145797 ||||||| ||| ||| || | | ||| ||||||| |||||| |||| ||||||||| Sbjct 1897 CCCCGGG-TCGCTTCCCGGTCACCTTGGCCACCATGTGGGTCAGGAGGGCGTAGCTGGCG 1839 Query 145798 ATGTTGAAGGGCACCCCCAGCCCC 145821 |||||||| ||||| ||||| ||| Sbjct 1838 ATGTTGAAAGGCACGCCCAGGCCC 1815 >seq116231 Length=1062 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCAT 146182 |||| || | ||||| |||||| |||||||||| ||||| | | |||| ||||| | Sbjct 734 CGAGAAACTGGCGGGAGCCGTTGCCGTCCCAGATGCGAACGCCACGCTCGGACAGCTCCT 675 Query 146183 TGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGA 146242 || || || ||||||| | |||||||||||||||||| | ||||| | |||||||| Sbjct 674 TGCCGTTGGTTGACCCCCGAAGGAACCAGAGCAGCTCTTCCACAACCCCTCGCCAGAAGA 615 Query 146243 CCCTCTTGGTGGTCAGCAGGGG 146264 ||| ||| || ||||||||||| Sbjct 614 CCCGCTTCGTCGTCAGCAGGGG 593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588568298164640