Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq20354 170 2e-37 seq112114 149 6e-31 >seq20354 Length=4240 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 116941 CCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000 |||| |||| |||||| | ||||||||||| ||| | || ||| || || ||||| || Sbjct 1321 CCGTCTGTTCAACGCCGTTGAGACGATGCCCTGCATTAAGAGGAAAGCAGACTGGGCACT 1380 Query 117001 GCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCG 117059 | |||||||| | | | ||| ||| | || ||||||||| | || || || ||||||| Sbjct 1381 GAACTGGATCGGCAACCG-GAGCGCCACATTTGGCGAGCGCATCGTCGCGTTTGCGGCCG 1439 Query 117060 TCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCC 117119 |||||||| ||||||| ||||| || || |||| || ||||| ||||| || || | Sbjct 1440 TCGAGGGCATCTTCTTCTCGGGATCGTTTGCGTCCATCTTCTGGCTGAAGAAGCGGGGAC 1499 Query 117120 TCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||||||||||||| || |||||||||||||||||| | ||||||| Sbjct 1500 TCATGCCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 1547 Score = 118 bits (130), Expect = 1e-21 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||| ||||||||| |||||| | |||||||| |||||||||||||| || Sbjct 343 GGTGGAGCGTTTCAGTCAGGAGGTCCAGGTGACGGAGGCGCGCTGCTTCTACGGCTTCCA 402 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||| ||||| ||||| |||||||| || ||||| |||||||||||| ||| Sbjct 403 GATGGCCATCGAGAATGTGCACTCCGAGATGTACAGCCTCCTCATCGACACTTAC 457 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAG 117214 |||| ||| |||| ||||| |||||| |||||| | |||||| ||| | ||| | Sbjct 2050 TCCACCGAC-AGGGCCTGCACACCGACTTCGCCTGTCTCATGTTCAGTCATCTTGTGAA- 2107 Query 117215 CGACCGAGCGCG-GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG 117273 | | | | | | | ||| || | ||||| || |||||| |||| ||| |||||| Sbjct 2108 CAAGCCATCTCAAGAGCGTGTGCGACAGATCATCTGCGACGCTGTCGTCATTGAGCAGGA 2167 Query 117274 CTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCA 117333 ||||| ||||| || || |||||| ||| | || | || ||||| |||| || Sbjct 2168 GTTCCTGACCGATGCTCTTCCGGTGGCCCTGATCGGCATGAACTGCGAGCTGATGAAGCG 2227 Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCG 117380 ||||||||||| ||||||||| | ||||| | ||||| | | ||| Sbjct 2228 CTACATCGAGTTTGTCGCCGACCGTCTGCTTGTGGAGCTTGGCTGCG 2274 >seq112114 Length=2115 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || ||||||||||| |||| || || | | | Sbjct 1524 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGGAGCCGAGC 1583 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| | |||| || |||| ||||| ||||| ||||| | ||||| Sbjct 1584 GACACGATTGAAAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGGATCCCGCCCGACCA 1642 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| ||||| ||||| || || | |||||| | ||||||||| Sbjct 1643 GCAACGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGACTACAA 1702 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| || | || ||| Sbjct 1703 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGGCTGCGCGGAGGC 1751 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| |||| || || | | | Sbjct 1752 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGAGCCGAGC 1811 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||||| | ||||| || || || ||| |||| || Sbjct 1812 GACACCATCGAAAACG-TCAAGGCCAAAATCCAGGACAAGGAAGGGATTCCCCCGGATCA 1870 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| || || || |||| |||||||| |||||||| Sbjct 1871 GCAGCGTCTCATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTGTCGGACTACAA 1930 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| || || || || |||| || | || ||| Sbjct 1931 CATCCAGAAAGAGTCCACCCTTCACCTGGTCCTGCGTCTGCGCGGTGGC 1979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513902067876160