Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq112114 134 9e-27 >seq112114 Length=2115 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||||| ||| |||||||| | || || ||||| ||||||||||||||| Sbjct 1750 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1691 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | | || ||| | || || | ||||||||| ||||| || || || ||||||||| || Sbjct 1690 AAGGTG-CGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGG 1632 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 1631 GATCCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCAC 1572 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||| ||||| || ||||| || ||||||||||| Sbjct 1571 CTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 1524 Score = 114 bits (126), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| |||||||| | || |||||||| ||||||||||| ||| Sbjct 1978 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 1919 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||| ||||| ||||| |||||||| || ||| Sbjct 1918 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 1859 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||||| ||| | | | || | ||| ||| || | Sbjct 1858 ATCCCTTCCTTGTC--CTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGCTCGGCTCAA 1801 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||| || ||||| ||||| || || || ||||||||||| Sbjct 1800 CCTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322266730520960