Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq112114 104 2e-17 >seq112114 Length=2115 Score = 104 bits (114), Expect = 2e-17 Identities = 170/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 24822 AGTT-AACA-TCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGAT 24879 |||| |||| |||||||||| || || |||||| | ||||| ||||| || || |||| Sbjct 1512 AGTTGAACAGTCATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAG 1571 Query 24880 GTCGAATCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCG-T 24938 || || ||||||||| | |||| || |||| || ||| | | | ||| ||| | | Sbjct 1572 GTGGAGCCGAGCGACACGATTGAAAACGTGAAGGCCAAGATT-CAGGACAAGGAGGGGAT 1630 Query 24939 ACCGGTTGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTAT 24998 ||| |||||||||||| | || | || ||||| || || |||||| | || | Sbjct 1631 CCCGCCCGACCAGCAACGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTT 1690 Query 24999 GAACGATTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | ||| |||| ||| ||||| ||| |||| || || | || | || |||||||||| Sbjct 1691 GTCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGGCTGCGCGGAGG 1750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417261361070720