Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1065 120 3e-22 seq112114 114 1e-20 seq20354 105 6e-18 >seq1065 Length=2691 Score = 120 bits (132), Expect = 3e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 23312 GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATC 23371 || |||||||| |||||| ||| | || || || | ||| || | ||||| ||| Sbjct 186 GGGCACATGAGGGACCACATCTGGTCCTGCTCCACCCGCCGCATGAACAAGTCCGGGATC 127 Query 23372 CATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA 23431 || || ||||||| || || || || || |||||| ||||| || ||||| |||| Sbjct 126 CAGAGGCCGTAGAAGAGGTCCCGCGCCCGATTCTCCTCCTTGCCTGTATTCTTCTTCAGG 67 Query 23432 TCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGT 23491 |||| ||||| ||||||||||||||||||||||| ||||| | ||||| || || || Sbjct 66 TCCAGGAAGTCAAACACGTCCGCATGCCACGGCTCCAGGTACATCGCAAATGCTCCGGGC 7 Query 23492 CTCT 23495 |||| Sbjct 6 CTCT 3 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||| | |||||||| || | ||||| || || ||||| ||||| || | Sbjct 1092 CCACCTCGTCCGGCGCAGTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGG 1033 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||| | || |||||||| || | ||||| | ||||||||| ||||||||||| | Sbjct 1032 TGCCGAGGTTCTTCTGGTTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGG 973 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 |||||||||| | ||||||||| | ||| || ||||| Sbjct 972 TGCCCGTCTCTATCTGCGACTCCAGGATGGCGTACCACA 934 >seq112114 Length=2115 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| |||||||| |||| ||||| ||| Sbjct 1751 CATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGAGCCGAG 1810 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||||| ||||| | ||| |||||||||||| | || || || || Sbjct 1811 CGACACCATCGAAAACGTCAAGGCCAAAATCCAGGACAAGGAAGGGATTCCCCCGGATCA 1870 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| || | || ||| || || || || || Sbjct 1871 GCAGCGTCTCATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTGTCGGACTACAA 1930 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || ||||| ||||| || Sbjct 1931 CATCCAGAAAGAGTCCACCCTTCACCTGGTCCT 1963 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 31179 GAATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCG 31238 || ||||| || |||||| || ||||| || || ||||| || ||||| ||||| ||| Sbjct 1511 GAGTTGAA-CAGTCATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCG 1569 Query 31239 ACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCG 31298 | || || ||| ||||| | |||| || || | || ||||||||| || Sbjct 1570 AGGTGGAGCCGAGCGACACGATTGAAAACGTGAAGGCCAAGATTCAGGACAAGGAGGGGA 1629 Query 31299 TGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTA 31358 | |||||||||||||| ||||| || ||||| ||||| ||| | ||||| || Sbjct 1630 TCCCGCCCGACCAGCAACGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCT 1689 Query 31359 TGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||| || ||||| || || || || || || || ||||| || Sbjct 1690 TGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 1735 >seq20354 Length=4240 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 ||||||||||| | || || |||||| || | ||| ||||| ||| || | || Sbjct 1325 CTGTTCAACGCCGTTGAGACGATGCCCTGCATTAAGAGGAAAGCAGACTGGGCACTGAAC 1384 Query 57939 TGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 ||||| | | | ||||| || | |||| | | ||||||| || |||||||| Sbjct 1385 TGGATCGGCAACCGGAGCGCCACATTTGGCGAGCGCATCGTCGCGTTTGCGGCCGTCGAG 1444 Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATG 58058 || || ||||| ||||| |||||| | || || ||| ||||||| || || || ||| Sbjct 1445 GGCATCTTCTTCTCGGGATCGTTTGCGTCCATCTTCTGGCTGAAGAAGCGGGGACTCATG 1504 Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||||||| || || ||||||||| | || || ||||||| Sbjct 1505 CCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 1547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444626820486720